miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9608 5' -56.3 NC_002577.1 + 128112 0.66 0.899172
Target:  5'- aCCUuAGCG-GGCCCCGGauagguuucUCGGUugGg -3'
miRNA:   3'- aGGGuUUGUgCCGGGGUU---------AGCCGugC- -5'
9608 5' -56.3 NC_002577.1 + 156039 0.66 0.899172
Target:  5'- gCCC--GCGCGGCUCCcGUCGcGgGCa -3'
miRNA:   3'- aGGGuuUGUGCCGGGGuUAGC-CgUGc -5'
9608 5' -56.3 NC_002577.1 + 141299 0.66 0.899172
Target:  5'- gCCC--GCGCGGCUCCcGUCGcGgGCa -3'
miRNA:   3'- aGGGuuUGUGCCGGGGuUAGC-CgUGc -5'
9608 5' -56.3 NC_002577.1 + 5502 0.66 0.899172
Target:  5'- aCCUuAGCG-GGCCCCGGauagguuucUCGGUugGg -3'
miRNA:   3'- aGGGuUUGUgCCGGGGUU---------AGCCGugC- -5'
9608 5' -56.3 NC_002577.1 + 71184 0.66 0.898534
Target:  5'- aCUUAGAC-CGGCCCCGcugcGUaucuccgcaaagaCGGCGCGc -3'
miRNA:   3'- aGGGUUUGuGCCGGGGU----UA-------------GCCGUGC- -5'
9608 5' -56.3 NC_002577.1 + 136798 0.66 0.89269
Target:  5'- uUCCCAAACGCGGacgcggguUCUCGA-CGGCGu- -3'
miRNA:   3'- -AGGGUUUGUGCC--------GGGGUUaGCCGUgc -5'
9608 5' -56.3 NC_002577.1 + 153584 0.66 0.89269
Target:  5'- cCCCGuuuaggcaAACGgGGCCCgGc-CGGCGCGa -3'
miRNA:   3'- aGGGU--------UUGUgCCGGGgUuaGCCGUGC- -5'
9608 5' -56.3 NC_002577.1 + 154668 0.66 0.89269
Target:  5'- gUUCGGAgAUGGUCCCGAUUGGCu-- -3'
miRNA:   3'- aGGGUUUgUGCCGGGGUUAGCCGugc -5'
9608 5' -56.3 NC_002577.1 + 160539 0.66 0.89269
Target:  5'- uUCCCAAACGCGGacgcggguUCUCGA-CGGCGu- -3'
miRNA:   3'- -AGGGUUUGUGCC--------GGGGUUaGCCGUgc -5'
9608 5' -56.3 NC_002577.1 + 137501 0.67 0.885985
Target:  5'- gUCCGGACGCgcgGGCgcgaCCAAUCGGUAUu -3'
miRNA:   3'- aGGGUUUGUG---CCGg---GGUUAGCCGUGc -5'
9608 5' -56.3 NC_002577.1 + 12036 0.67 0.885985
Target:  5'- gCCCGGGuCGucGCCCgGGUCGGCGCc -3'
miRNA:   3'- aGGGUUU-GUgcCGGGgUUAGCCGUGc -5'
9608 5' -56.3 NC_002577.1 + 17556 0.67 0.885985
Target:  5'- cCCCGAAUuaugcuguccuaACGGCUCCAaguuGUUGGCGg- -3'
miRNA:   3'- aGGGUUUG------------UGCCGGGGU----UAGCCGUgc -5'
9608 5' -56.3 NC_002577.1 + 143402 0.67 0.885985
Target:  5'- cUCCCGGACGCGaCCCCA--UGGUccuuuuacauaACGg -3'
miRNA:   3'- -AGGGUUUGUGCcGGGGUuaGCCG-----------UGC- -5'
9608 5' -56.3 NC_002577.1 + 159837 0.67 0.885985
Target:  5'- gUCCGGACGCgcgGGCgcgaCCAAUCGGUAUu -3'
miRNA:   3'- aGGGUUUGUG---CCGg---GGUUAGCCGUGc -5'
9608 5' -56.3 NC_002577.1 + 158851 0.67 0.885985
Target:  5'- gCCgCGGcCGCGGCCgCGGaggaCGGCGCGg -3'
miRNA:   3'- aGG-GUUuGUGCCGGgGUUa---GCCGUGC- -5'
9608 5' -56.3 NC_002577.1 + 53500 0.67 0.885985
Target:  5'- -aCCGAcCACGGCCgCAcguccgacauGUCcGGCGCGc -3'
miRNA:   3'- agGGUUuGUGCCGGgGU----------UAG-CCGUGC- -5'
9608 5' -56.3 NC_002577.1 + 138486 0.67 0.885985
Target:  5'- gCCgCGGcCGCGGCCgCgGAggaCGGCGCGg -3'
miRNA:   3'- aGG-GUUuGUGCCGG-GgUUa--GCCGUGC- -5'
9608 5' -56.3 NC_002577.1 + 88059 0.67 0.87906
Target:  5'- uUCCC---CACGGUUCCAGU-GGCGCc -3'
miRNA:   3'- -AGGGuuuGUGCCGGGGUUAgCCGUGc -5'
9608 5' -56.3 NC_002577.1 + 122543 0.67 0.87906
Target:  5'- cCCCcGGCGCGGgCCgCGGcCGGaCACGa -3'
miRNA:   3'- aGGGuUUGUGCCgGG-GUUaGCC-GUGC- -5'
9608 5' -56.3 NC_002577.1 + 11070 0.67 0.87906
Target:  5'- cCCCcGGCGCGGgCCgCGGcCGGaCACGa -3'
miRNA:   3'- aGGGuUUGUGCCgGG-GUUaGCC-GUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.