miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9609 5' -52.8 NC_002577.1 + 89180 0.66 0.969017
Target:  5'- -cGGCCGC-CGGCGGaUAGAGGaCAGg- -3'
miRNA:   3'- cuUCGGCGaGUUGUC-GUCUUC-GUCau -5'
9609 5' -52.8 NC_002577.1 + 134135 0.67 0.950413
Target:  5'- cGGAGCCGC-CGGCGGUc--GGCGGUc -3'
miRNA:   3'- -CUUCGGCGaGUUGUCGucuUCGUCAu -5'
9609 5' -52.8 NC_002577.1 + 163193 0.67 0.950413
Target:  5'- cGGAGCCGC-CGGCGGUc--GGCGGUc -3'
miRNA:   3'- -CUUCGGCGaGUUGUCGucuUCGUCAu -5'
9609 5' -52.8 NC_002577.1 + 33991 0.67 0.945952
Target:  5'- --cGCCGa---GCAcGCAGAAGCAGUGc -3'
miRNA:   3'- cuuCGGCgaguUGU-CGUCUUCGUCAU- -5'
9609 5' -52.8 NC_002577.1 + 158073 0.67 0.945952
Target:  5'- aGAAGCCGCcgCGGCGcCGGcuGCAGUc -3'
miRNA:   3'- -CUUCGGCGa-GUUGUcGUCuuCGUCAu -5'
9609 5' -52.8 NC_002577.1 + 139265 0.67 0.945952
Target:  5'- aGAAGCCGCcgCGGCGcCGGcuGCAGUc -3'
miRNA:   3'- -CUUCGGCGa-GUUGUcGUCuuCGUCAu -5'
9609 5' -52.8 NC_002577.1 + 73367 0.67 0.941236
Target:  5'- aAGGCCGUUCGGCGGggaaaAGAGGaCGGUc -3'
miRNA:   3'- cUUCGGCGAGUUGUCg----UCUUC-GUCAu -5'
9609 5' -52.8 NC_002577.1 + 136141 0.67 0.941236
Target:  5'- cAGGCggCGCUCuccgguaGGCAGAGGCGGUu -3'
miRNA:   3'- cUUCG--GCGAGuug----UCGUCUUCGUCAu -5'
9609 5' -52.8 NC_002577.1 + 161197 0.67 0.941236
Target:  5'- cAGGCggCGCUCuccgguaGGCAGAGGCGGUu -3'
miRNA:   3'- cUUCG--GCGAGuug----UCGUCUUCGUCAu -5'
9609 5' -52.8 NC_002577.1 + 121587 0.68 0.919774
Target:  5'- --cGCgCGCUCGGCGcGCcGGAGCAGg- -3'
miRNA:   3'- cuuCG-GCGAGUUGU-CGuCUUCGUCau -5'
9609 5' -52.8 NC_002577.1 + 35911 0.68 0.919774
Target:  5'- gGAGGCgCGCUCGgagaACGGCgaAGAAGCAc-- -3'
miRNA:   3'- -CUUCG-GCGAGU----UGUCG--UCUUCGUcau -5'
9609 5' -52.8 NC_002577.1 + 55025 0.68 0.906836
Target:  5'- -cGGCUGCggcgucggcaaguUCAGCcGCAGAAGCAGc- -3'
miRNA:   3'- cuUCGGCG-------------AGUUGuCGUCUUCGUCau -5'
9609 5' -52.8 NC_002577.1 + 90652 0.68 0.900944
Target:  5'- -uGGCCGCggCGGCAGCAaccGAAGCGu-- -3'
miRNA:   3'- cuUCGGCGa-GUUGUCGU---CUUCGUcau -5'
9609 5' -52.8 NC_002577.1 + 158847 0.69 0.872304
Target:  5'- aGAGGCCGCggccgCGGCcGCGGAGGaCGGc- -3'
miRNA:   3'- -CUUCGGCGa----GUUGuCGUCUUC-GUCau -5'
9609 5' -52.8 NC_002577.1 + 138490 0.69 0.872304
Target:  5'- aGAGGCCGCggccgCGGCcGCGGAGGaCGGc- -3'
miRNA:   3'- -CUUCGGCGa----GUUGuCGUCUUC-GUCau -5'
9609 5' -52.8 NC_002577.1 + 17747 0.69 0.872304
Target:  5'- uGGAGCCGUUagGACAGCauaauucgGGGAGCAGc- -3'
miRNA:   3'- -CUUCGGCGAg-UUGUCG--------UCUUCGUCau -5'
9609 5' -52.8 NC_002577.1 + 15128 0.69 0.856551
Target:  5'- aGAGGCCGCUCcaucguACAGuCGGcaacGGCAGUc -3'
miRNA:   3'- -CUUCGGCGAGu-----UGUC-GUCu---UCGUCAu -5'
9609 5' -52.8 NC_002577.1 + 54369 0.71 0.765818
Target:  5'- -uAGCUGCUUggUA-CGGAAGCAGUAa -3'
miRNA:   3'- cuUCGGCGAGuuGUcGUCUUCGUCAU- -5'
9609 5' -52.8 NC_002577.1 + 40993 1.07 0.005757
Target:  5'- aGAAGCCGCUCAACAGCAGAAGCAGUAa -3'
miRNA:   3'- -CUUCGGCGAGUUGUCGUCUUCGUCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.