Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9610 | 3' | -49.8 | NC_002577.1 | + | 112855 | 0.71 | 0.942523 |
Target: 5'- --aCCGGAGCGCU-GCGGUGa--CGCa -3' miRNA: 3'- caaGGCUUUGCGAgCGUCACauaGCG- -5' |
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9610 | 3' | -49.8 | NC_002577.1 | + | 26429 | 0.67 | 0.996655 |
Target: 5'- --aCCGcAAGCGaCUCGUAGUGUuucuaaaGCg -3' miRNA: 3'- caaGGC-UUUGC-GAGCGUCACAuag----CG- -5' |
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9610 | 3' | -49.8 | NC_002577.1 | + | 130252 | 0.67 | 0.994475 |
Target: 5'- -aUCCGGAACGC-CGCGGgacgaagcCGCc -3' miRNA: 3'- caAGGCUUUGCGaGCGUCacaua---GCG- -5' |
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9610 | 3' | -49.8 | NC_002577.1 | + | 135105 | 0.67 | 0.993781 |
Target: 5'- -gUCCGucucccCGCUCGCGGaUGauaUGUCGUa -3' miRNA: 3'- caAGGCuuu---GCGAGCGUC-AC---AUAGCG- -5' |
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9610 | 3' | -49.8 | NC_002577.1 | + | 10686 | 0.69 | 0.986077 |
Target: 5'- gGUUCCG-GACGC-CGCgAGg--GUCGCg -3' miRNA: 3'- -CAAGGCuUUGCGaGCG-UCacaUAGCG- -5' |
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9610 | 3' | -49.8 | NC_002577.1 | + | 124257 | 0.69 | 0.98371 |
Target: 5'- --cCCGGGACGCgUCGUuucuugcgaaacggGGUGgAUCGCu -3' miRNA: 3'- caaGGCUUUGCG-AGCG--------------UCACaUAGCG- -5' |
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9610 | 3' | -49.8 | NC_002577.1 | + | 3326 | 0.66 | 0.997168 |
Target: 5'- -aUCCGGAgaGCGCgUCGCAc---GUCGCg -3' miRNA: 3'- caAGGCUU--UGCG-AGCGUcacaUAGCG- -5' |
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9610 | 3' | -49.8 | NC_002577.1 | + | 117646 | 0.67 | 0.995398 |
Target: 5'- --gCCGAAAaaauCGCaUCGCAGUGcagagcuauUCGCg -3' miRNA: 3'- caaGGCUUU----GCG-AGCGUCACau-------AGCG- -5' |
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9610 | 3' | -49.8 | NC_002577.1 | + | 130478 | 0.68 | 0.992817 |
Target: 5'- ---gCGAAGCGUUCuGCGGg--AUCGCg -3' miRNA: 3'- caagGCUUUGCGAG-CGUCacaUAGCG- -5' |
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9610 | 3' | -49.8 | NC_002577.1 | + | 128638 | 0.7 | 0.972571 |
Target: 5'- -cUCCGAGGguaGCaCGCGGUG-GUCGCu -3' miRNA: 3'- caAGGCUUUg--CGaGCGUCACaUAGCG- -5' |
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9610 | 3' | -49.8 | NC_002577.1 | + | 23349 | 0.71 | 0.959441 |
Target: 5'- cGUUCCGGucgucagaagcgAGCGCUCuauGCAG-GcGUCGCg -3' miRNA: 3'- -CAAGGCU------------UUGCGAG---CGUCaCaUAGCG- -5' |
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9610 | 3' | -49.8 | NC_002577.1 | + | 160185 | 0.66 | 0.998332 |
Target: 5'- cUUCCGGAACGUcCGaGGgccgGUCGCg -3' miRNA: 3'- cAAGGCUUUGCGaGCgUCaca-UAGCG- -5' |
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9610 | 3' | -49.8 | NC_002577.1 | + | 122860 | 0.7 | 0.963065 |
Target: 5'- --gCCGAAcgcCGCUCGCGGaacacgGUCGCg -3' miRNA: 3'- caaGGCUUu--GCGAGCGUCaca---UAGCG- -5' |
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9610 | 3' | -49.8 | NC_002577.1 | + | 52276 | 0.67 | 0.994639 |
Target: 5'- aUUCCGAuuACGCggCGuCGGUcguugccucugcGUAUCGCu -3' miRNA: 3'- cAAGGCUu-UGCGa-GC-GUCA------------CAUAGCG- -5' |
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9610 | 3' | -49.8 | NC_002577.1 | + | 121766 | 0.66 | 0.998616 |
Target: 5'- -gUCCGGAgggGCGCgcggaucaGCGGUcggGUCGCg -3' miRNA: 3'- caAGGCUU---UGCGag------CGUCAca-UAGCG- -5' |
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9610 | 3' | -49.8 | NC_002577.1 | + | 41016 | 0.72 | 0.918085 |
Target: 5'- -gUCCGcGGAugccauaggagagugUGCcgCGCAGUGUAUCGCg -3' miRNA: 3'- caAGGC-UUU---------------GCGa-GCGUCACAUAGCG- -5' |
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9610 | 3' | -49.8 | NC_002577.1 | + | 122928 | 0.69 | 0.986077 |
Target: 5'- gGUUCCG-GACGC-CGCgAGg--GUCGCg -3' miRNA: 3'- -CAAGGCuUUGCGaGCG-UCacaUAGCG- -5' |
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9610 | 3' | -49.8 | NC_002577.1 | + | 49540 | 0.68 | 0.989193 |
Target: 5'- -aUCCGuAAACGCggUCGCAcUGggaaAUCGCg -3' miRNA: 3'- caAGGC-UUUGCG--AGCGUcACa---UAGCG- -5' |
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9610 | 3' | -49.8 | NC_002577.1 | + | 142019 | 0.68 | 0.990532 |
Target: 5'- --aCCGcacaguCGCUCGCAGgagcGUGUCGa -3' miRNA: 3'- caaGGCuuu---GCGAGCGUCa---CAUAGCg -5' |
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9610 | 3' | -49.8 | NC_002577.1 | + | 3136 | 0.68 | 0.992817 |
Target: 5'- ---gCGAAGCGUUCuGCGGg--AUCGCg -3' miRNA: 3'- caagGCUUUGCGAG-CGUCacaUAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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