miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9611 5' -54.6 NC_002577.1 + 39672 0.66 0.95585
Target:  5'- aAGAAGGCagCCGAGGCuaucACCaGgcGAGCg -3'
miRNA:   3'- gUCUUCUG--GGCUCCG----UGGgCaaCUUG- -5'
9611 5' -54.6 NC_002577.1 + 129847 0.66 0.951877
Target:  5'- gAGAGGGCCCGugguuAGGCGUCUGUacuccGAACu -3'
miRNA:   3'- gUCUUCUGGGC-----UCCGUGGGCAa----CUUG- -5'
9611 5' -54.6 NC_002577.1 + 160127 0.66 0.951877
Target:  5'- gAGAAGGCCCGAcGGCugCaacgCGUgGcGCg -3'
miRNA:   3'- gUCUUCUGGGCU-CCGugG----GCAaCuUG- -5'
9611 5' -54.6 NC_002577.1 + 137211 0.66 0.951877
Target:  5'- gAGAAGGCCCGAcGGCugCaacgCGUgGcGCg -3'
miRNA:   3'- gUCUUCUGGGCU-CCGugG----GCAaCuUG- -5'
9611 5' -54.6 NC_002577.1 + 3766 0.66 0.951877
Target:  5'- gAGAGGGCCCGugguuAGGCGUCUGUacuccGAACu -3'
miRNA:   3'- gUCUUCUGGGC-----UCCGUGGGCAa----CUUG- -5'
9611 5' -54.6 NC_002577.1 + 46862 0.66 0.951468
Target:  5'- uCAGGAGucuACCUGuAGGCGCUaacguugcuccuaCGUUGAAUg -3'
miRNA:   3'- -GUCUUC---UGGGC-UCCGUGG-------------GCAACUUG- -5'
9611 5' -54.6 NC_002577.1 + 139385 0.66 0.94323
Target:  5'- uGGAAGGCCgGgaAGGCAgCCCGaaccccUGGACc -3'
miRNA:   3'- gUCUUCUGGgC--UCCGU-GGGCa-----ACUUG- -5'
9611 5' -54.6 NC_002577.1 + 157952 0.66 0.94323
Target:  5'- uGGAAGGCCgGgaAGGCAgCCCGaaccccUGGACc -3'
miRNA:   3'- gUCUUCUGGgC--UCCGU-GGGCa-----ACUUG- -5'
9611 5' -54.6 NC_002577.1 + 148149 0.67 0.92306
Target:  5'- uCGGAGGGCCgCGuauucgucuGUACCCGUUGGGa -3'
miRNA:   3'- -GUCUUCUGG-GCuc-------CGUGGGCAACUUg -5'
9611 5' -54.6 NC_002577.1 + 562 0.68 0.878541
Target:  5'- uCAGAcccgcGGACCCGGGcaacuuGUACCCGgccccGAGCg -3'
miRNA:   3'- -GUCU-----UCUGGGCUC------CGUGGGCaa---CUUG- -5'
9611 5' -54.6 NC_002577.1 + 133052 0.68 0.878541
Target:  5'- uCAGAcccgcGGACCCGGGcaacuuGUACCCGgccccGAGCg -3'
miRNA:   3'- -GUCU-----UCUGGGCUC------CGUGGGCaa---CUUG- -5'
9611 5' -54.6 NC_002577.1 + 29921 0.69 0.863761
Target:  5'- gCAGAAGACUCGcGGGCGg--GUUGAACa -3'
miRNA:   3'- -GUCUUCUGGGC-UCCGUgggCAACUUG- -5'
9611 5' -54.6 NC_002577.1 + 107581 0.7 0.805729
Target:  5'- gGGGAGAUCCGGuccGGCgACUCGUucuUGGACg -3'
miRNA:   3'- gUCUUCUGGGCU---CCG-UGGGCA---ACUUG- -5'
9611 5' -54.6 NC_002577.1 + 40785 0.72 0.709116
Target:  5'- aGGGAGACCgGGGGguuuuuacugcuuCugCUGUUGAGCg -3'
miRNA:   3'- gUCUUCUGGgCUCC-------------GugGGCAACUUG- -5'
9611 5' -54.6 NC_002577.1 + 44519 0.97 0.025633
Target:  5'- gCAGAAGA-CCGAGGCACCCGUUGAACg -3'
miRNA:   3'- -GUCUUCUgGGCUCCGUGGGCAACUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.