Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9612 | 3' | -50.3 | NC_002577.1 | + | 46771 | 1.1 | 0.008622 |
Target: 5'- cCAUCCUGCCGAUCAACCGCUUUACACu -3' miRNA: 3'- -GUAGGACGGCUAGUUGGCGAAAUGUG- -5' |
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9612 | 3' | -50.3 | NC_002577.1 | + | 72752 | 0.73 | 0.84431 |
Target: 5'- aGUCCUcGCCGcUCGACCGUUccgUAUACu -3' miRNA: 3'- gUAGGA-CGGCuAGUUGGCGAa--AUGUG- -5' |
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9612 | 3' | -50.3 | NC_002577.1 | + | 85835 | 0.72 | 0.904249 |
Target: 5'- -cUCCUGCUGuacCAGCUGCgaaUUUACACg -3' miRNA: 3'- guAGGACGGCua-GUUGGCG---AAAUGUG- -5' |
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9612 | 3' | -50.3 | NC_002577.1 | + | 69326 | 0.7 | 0.943557 |
Target: 5'- uCAUUCUGCCGAauaAGCCGCaggUGCGu -3' miRNA: 3'- -GUAGGACGGCUag-UUGGCGaa-AUGUg -5' |
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9612 | 3' | -50.3 | NC_002577.1 | + | 132527 | 0.68 | 0.978561 |
Target: 5'- gCGUCCggacgUGCCGGaCAAUCGCg-UACGCg -3' miRNA: 3'- -GUAGG-----ACGGCUaGUUGGCGaaAUGUG- -5' |
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9612 | 3' | -50.3 | NC_002577.1 | + | 59999 | 0.68 | 0.978561 |
Target: 5'- --aCUUGCCG-UUAACCGUUgcGCGCa -3' miRNA: 3'- guaGGACGGCuAGUUGGCGAaaUGUG- -5' |
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9612 | 3' | -50.3 | NC_002577.1 | + | 1087 | 0.68 | 0.978562 |
Target: 5'- gCGUCCggacgUGCCGGaCAAUCGCg-UACGCg -3' miRNA: 3'- -GUAGG-----ACGGCUaGUUGGCGaaAUGUG- -5' |
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9612 | 3' | -50.3 | NC_002577.1 | + | 137145 | 0.67 | 0.988236 |
Target: 5'- aCGUCCgaggGCCGGUCGcgcuCCGCggagccuugUUACGa -3' miRNA: 3'- -GUAGGa---CGGCUAGUu---GGCGa--------AAUGUg -5' |
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9612 | 3' | -50.3 | NC_002577.1 | + | 160193 | 0.67 | 0.988236 |
Target: 5'- aCGUCCgaggGCCGGUCGcgcuCCGCggagccuugUUACGa -3' miRNA: 3'- -GUAGGa---CGGCUAGUu---GGCGa--------AAUGUg -5' |
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9612 | 3' | -50.3 | NC_002577.1 | + | 43845 | 0.67 | 0.990979 |
Target: 5'- aUAUCCUGCC-AUCAGCgCGUacgACAUu -3' miRNA: 3'- -GUAGGACGGcUAGUUG-GCGaaaUGUG- -5' |
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9612 | 3' | -50.3 | NC_002577.1 | + | 130056 | 0.67 | 0.992147 |
Target: 5'- --gCUUGCCGGggagUAACCGUcaUGCACu -3' miRNA: 3'- guaGGACGGCUa---GUUGGCGaaAUGUG- -5' |
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9612 | 3' | -50.3 | NC_002577.1 | + | 141586 | 0.67 | 0.992147 |
Target: 5'- cCAUCC-GcCCGAUUAACCccuGCaUUUACGCc -3' miRNA: 3'- -GUAGGaC-GGCUAGUUGG---CG-AAAUGUG- -5' |
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9612 | 3' | -50.3 | NC_002577.1 | + | 3558 | 0.67 | 0.992147 |
Target: 5'- --gCUUGCCGGggagUAACCGUcaUGCACu -3' miRNA: 3'- guaGGACGGCUa---GUUGGCGaaAUGUG- -5' |
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9612 | 3' | -50.3 | NC_002577.1 | + | 41767 | 0.67 | 0.992147 |
Target: 5'- -cUUCgggGCCGGUCAcgcuucuguuggGCCGCg--ACACg -3' miRNA: 3'- guAGGa--CGGCUAGU------------UGGCGaaaUGUG- -5' |
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9612 | 3' | -50.3 | NC_002577.1 | + | 155751 | 0.67 | 0.992147 |
Target: 5'- cCAUCC-GcCCGAUUAACCccuGCaUUUACGCc -3' miRNA: 3'- -GUAGGaC-GGCUAGUUGG---CG-AAAUGUG- -5' |
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9612 | 3' | -50.3 | NC_002577.1 | + | 91981 | 0.66 | 0.994122 |
Target: 5'- gCGUUgaUGCCGA-CAGCCGCauccGCACa -3' miRNA: 3'- -GUAGg-ACGGCUaGUUGGCGaaa-UGUG- -5' |
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9612 | 3' | -50.3 | NC_002577.1 | + | 79573 | 0.66 | 0.994122 |
Target: 5'- -uUCCaauaCGAUCAA-CGCUUUGCGCg -3' miRNA: 3'- guAGGacg-GCUAGUUgGCGAAAUGUG- -5' |
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9612 | 3' | -50.3 | NC_002577.1 | + | 59165 | 0.66 | 0.995676 |
Target: 5'- -cUCC-GCUGGUUAGCCGU---ACACg -3' miRNA: 3'- guAGGaCGGCUAGUUGGCGaaaUGUG- -5' |
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9612 | 3' | -50.3 | NC_002577.1 | + | 77277 | 0.66 | 0.996133 |
Target: 5'- gCGUCCUGUCGGUCGagcACgGCgaugucaucauaugACGCg -3' miRNA: 3'- -GUAGGACGGCUAGU---UGgCGaaa-----------UGUG- -5' |
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9612 | 3' | -50.3 | NC_002577.1 | + | 73175 | 0.66 | 0.996317 |
Target: 5'- cCGUCCUcuuuuccccGCCGAaCGGCCuugaUUUGCACg -3' miRNA: 3'- -GUAGGA---------CGGCUaGUUGGcg--AAAUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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