Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9612 | 5' | -48.8 | NC_002577.1 | + | 137606 | 0.69 | 0.989679 |
Target: 5'- uGCGCGcuggaGUGCgAGGgGGUCGU--GGCGg -3' miRNA: 3'- -CGCGCa----UACG-UUCgCUAGCAauUCGC- -5' |
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9612 | 5' | -48.8 | NC_002577.1 | + | 9270 | 0.69 | 0.988236 |
Target: 5'- cGUGCGUguacgagaccgcGUGCGAGCGGucUCGUcgUAGuGCGu -3' miRNA: 3'- -CGCGCA------------UACGUUCGCU--AGCA--AUU-CGC- -5' |
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9612 | 5' | -48.8 | NC_002577.1 | + | 7948 | 0.71 | 0.967332 |
Target: 5'- aGCGCGUAaGUAccggcguuccgGGCGGUCGgcGAGuCGg -3' miRNA: 3'- -CGCGCAUaCGU-----------UCGCUAGCaaUUC-GC- -5' |
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9612 | 5' | -48.8 | NC_002577.1 | + | 58353 | 0.76 | 0.818189 |
Target: 5'- gGCGCG-AUGUAcauuGGCGAUCGUacuGGCGu -3' miRNA: 3'- -CGCGCaUACGU----UCGCUAGCAau-UCGC- -5' |
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9612 | 5' | -48.8 | NC_002577.1 | + | 46733 | 1.12 | 0.011182 |
Target: 5'- aGCGCGUAUGCAAGCGAUCGUUAAGCGc -3' miRNA: 3'- -CGCGCAUACGUUCGCUAGCAAUUCGC- -5' |
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9612 | 5' | -48.8 | NC_002577.1 | + | 101308 | 0.66 | 0.999442 |
Target: 5'- aGC-CGUGcGCAAGC-AUCGU--GGCGg -3' miRNA: 3'- -CGcGCAUaCGUUCGcUAGCAauUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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