miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9612 5' -48.8 NC_002577.1 + 7948 0.71 0.967332
Target:  5'- aGCGCGUAaGUAccggcguuccgGGCGGUCGgcGAGuCGg -3'
miRNA:   3'- -CGCGCAUaCGU-----------UCGCUAGCaaUUC-GC- -5'
9612 5' -48.8 NC_002577.1 + 9270 0.69 0.988236
Target:  5'- cGUGCGUguacgagaccgcGUGCGAGCGGucUCGUcgUAGuGCGu -3'
miRNA:   3'- -CGCGCA------------UACGUUCGCU--AGCA--AUU-CGC- -5'
9612 5' -48.8 NC_002577.1 + 9301 0.67 0.997365
Target:  5'- uCGCGUacaGUGCGu-CGAUCGUUAAGg- -3'
miRNA:   3'- cGCGCA---UACGUucGCUAGCAAUUCgc -5'
9612 5' -48.8 NC_002577.1 + 10267 0.68 0.996877
Target:  5'- aCGCGUAcau-AGCGAUCGUgggcUGGGCa -3'
miRNA:   3'- cGCGCAUacguUCGCUAGCA----AUUCGc -5'
9612 5' -48.8 NC_002577.1 + 22802 0.68 0.994947
Target:  5'- uGCGCGUGUaaggaGCcuGGCGGacgcaUCGgUGAGCGa -3'
miRNA:   3'- -CGCGCAUA-----CGu-UCGCU-----AGCaAUUCGC- -5'
9612 5' -48.8 NC_002577.1 + 33325 0.71 0.97607
Target:  5'- aGCGCucucGCGAGCGGcUCGUUAcGCGu -3'
miRNA:   3'- -CGCGcauaCGUUCGCU-AGCAAUuCGC- -5'
9612 5' -48.8 NC_002577.1 + 42766 0.69 0.990979
Target:  5'- cCGCGgaagGUuAGCGAUCGgcGAGCu -3'
miRNA:   3'- cGCGCaua-CGuUCGCUAGCaaUUCGc -5'
9612 5' -48.8 NC_002577.1 + 46733 1.12 0.011182
Target:  5'- aGCGCGUAUGCAAGCGAUCGUUAAGCGc -3'
miRNA:   3'- -CGCGCAUACGUUCGCUAGCAAUUCGC- -5'
9612 5' -48.8 NC_002577.1 + 58353 0.76 0.818189
Target:  5'- gGCGCG-AUGUAcauuGGCGAUCGUacuGGCGu -3'
miRNA:   3'- -CGCGCaUACGU----UCGCUAGCAau-UCGC- -5'
9612 5' -48.8 NC_002577.1 + 96473 0.7 0.982961
Target:  5'- cGUGCGUccGCAGGCGuUCGgc-AGCc -3'
miRNA:   3'- -CGCGCAuaCGUUCGCuAGCaauUCGc -5'
9612 5' -48.8 NC_002577.1 + 101308 0.66 0.999442
Target:  5'- aGC-CGUGcGCAAGC-AUCGU--GGCGg -3'
miRNA:   3'- -CGcGCAUaCGUUCGcUAGCAauUCGC- -5'
9612 5' -48.8 NC_002577.1 + 104183 0.67 0.998152
Target:  5'- aGCGCGUGUGCuugcuucGCcGUCcGUUuccAGGCGa -3'
miRNA:   3'- -CGCGCAUACGuu-----CGcUAG-CAA---UUCGC- -5'
9612 5' -48.8 NC_002577.1 + 105894 0.67 0.997365
Target:  5'- gGCGCGUuugcuaaaaAUGCAGGCGGggcUGUcaaAGGCa -3'
miRNA:   3'- -CGCGCA---------UACGUUCGCUa--GCAa--UUCGc -5'
9612 5' -48.8 NC_002577.1 + 108285 0.66 0.999489
Target:  5'- uCGCGUuaucaacgacuGUGCGAucucguugcccaaacGCGAU-GUUAAGCGg -3'
miRNA:   3'- cGCGCA-----------UACGUU---------------CGCUAgCAAUUCGC- -5'
9612 5' -48.8 NC_002577.1 + 123347 0.68 0.996877
Target:  5'- aCGCGUAcau-AGCGAUCGUgggcUGGGCa -3'
miRNA:   3'- cGCGCAUacguUCGCUAGCA----AUUCGc -5'
9612 5' -48.8 NC_002577.1 + 124313 0.67 0.997365
Target:  5'- uCGCGUacaGUGCGu-CGAUCGUUAAGg- -3'
miRNA:   3'- cGCGCA---UACGUucGCUAGCAAUUCgc -5'
9612 5' -48.8 NC_002577.1 + 124344 0.69 0.988236
Target:  5'- cGUGCGUguacgagaccgcGUGCGAGCGGucUCGUcgUAGuGCGu -3'
miRNA:   3'- -CGCGCA------------UACGUUCGCU--AGCA--AUU-CGC- -5'
9612 5' -48.8 NC_002577.1 + 125666 0.71 0.967332
Target:  5'- aGCGCGUAaGUAccggcguuccgGGCGGUCGgcGAGuCGg -3'
miRNA:   3'- -CGCGCAUaCGU-----------UCGCUAGCaaUUC-GC- -5'
9612 5' -48.8 NC_002577.1 + 137606 0.69 0.989679
Target:  5'- uGCGCGcuggaGUGCgAGGgGGUCGU--GGCGg -3'
miRNA:   3'- -CGCGCa----UACG-UUCgCUAGCAauUCGC- -5'
9612 5' -48.8 NC_002577.1 + 138924 0.66 0.999309
Target:  5'- gGCGCGU--GCGGGaCGAgagcCGUgGGGCGu -3'
miRNA:   3'- -CGCGCAuaCGUUC-GCUa---GCAaUUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.