Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 9612 | 5' | -48.8 | NC_002577.1 | + | 96473 | 0.7 | 0.982961 |
|
Target: 5'- cGUGCGUccGCAGGCGuUCGgc-AGCc -3' miRNA: 3'- -CGCGCAuaCGUUCGCuAGCaauUCGc -5' |
|||||||
| 9612 | 5' | -48.8 | NC_002577.1 | + | 33325 | 0.71 | 0.97607 |
|
Target: 5'- aGCGCucucGCGAGCGGcUCGUUAcGCGu -3' miRNA: 3'- -CGCGcauaCGUUCGCU-AGCAAUuCGC- -5' |
|||||||
| 9612 | 5' | -48.8 | NC_002577.1 | + | 125666 | 0.71 | 0.967332 |
|
Target: 5'- aGCGCGUAaGUAccggcguuccgGGCGGUCGgcGAGuCGg -3' miRNA: 3'- -CGCGCAUaCGU-----------UCGCUAGCaaUUC-GC- -5' |
|||||||
| 9612 | 5' | -48.8 | NC_002577.1 | + | 7948 | 0.71 | 0.967332 |
|
Target: 5'- aGCGCGUAaGUAccggcguuccgGGCGGUCGgcGAGuCGg -3' miRNA: 3'- -CGCGCAUaCGU-----------UCGCUAGCaaUUC-GC- -5' |
|||||||
| 9612 | 5' | -48.8 | NC_002577.1 | + | 58353 | 0.76 | 0.818189 |
|
Target: 5'- gGCGCG-AUGUAcauuGGCGAUCGUacuGGCGu -3' miRNA: 3'- -CGCGCaUACGU----UCGCUAGCAau-UCGC- -5' |
|||||||
| 9612 | 5' | -48.8 | NC_002577.1 | + | 46733 | 1.12 | 0.011182 |
|
Target: 5'- aGCGCGUAUGCAAGCGAUCGUUAAGCGc -3' miRNA: 3'- -CGCGCAUACGUUCGCUAGCAAUUCGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home