miRNA display CGI


Results 1 - 20 of 20 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9613 5' -52.6 NC_002577.1 + 117305 0.66 0.982747
Target:  5'- cGGGcGAACAUGU-GUCAUGUgCCGCa-- -3'
miRNA:   3'- -UCU-CUUGUACAgCAGUGCA-GGCGcua -5'
9613 5' -52.6 NC_002577.1 + 10651 0.66 0.97842
Target:  5'- cGAGAACgAUGgggCGUCcucccucgACGUCCGaCGGUu -3'
miRNA:   3'- uCUCUUG-UACa--GCAG--------UGCAGGC-GCUA- -5'
9613 5' -52.6 NC_002577.1 + 122963 0.66 0.97842
Target:  5'- cGAGAACgAUGgggCGUCcucccucgACGUCCGaCGGUu -3'
miRNA:   3'- uCUCUUG-UACa--GCAG--------UGCAGGC-GCUA- -5'
9613 5' -52.6 NC_002577.1 + 130285 0.67 0.960677
Target:  5'- cGGAGAGCGcGUCG-CACGU-CGCGu- -3'
miRNA:   3'- -UCUCUUGUaCAGCaGUGCAgGCGCua -5'
9613 5' -52.6 NC_002577.1 + 3329 0.67 0.960677
Target:  5'- cGGAGAGCGcGUCG-CACGU-CGCGu- -3'
miRNA:   3'- -UCUCUUGUaCAGCaGUGCAgGCGCua -5'
9613 5' -52.6 NC_002577.1 + 157264 0.68 0.956955
Target:  5'- cGGAGGACGgcucCGUCGCGccgUCGCGAg -3'
miRNA:   3'- -UCUCUUGUaca-GCAGUGCa--GGCGCUa -5'
9613 5' -52.6 NC_002577.1 + 122777 0.68 0.956955
Target:  5'- gGGAGGACGccccaUCGUUcuCGUCCGCGGa -3'
miRNA:   3'- -UCUCUUGUac---AGCAGu-GCAGGCGCUa -5'
9613 5' -52.6 NC_002577.1 + 10836 0.68 0.956955
Target:  5'- gGGAGGACGccccaUCGUUcuCGUCCGCGGa -3'
miRNA:   3'- -UCUCUUGUac---AGCAGu-GCAGGCGCUa -5'
9613 5' -52.6 NC_002577.1 + 140074 0.68 0.956955
Target:  5'- cGGAGGACGgcucCGUCGCGccgUCGCGAg -3'
miRNA:   3'- -UCUCUUGUaca-GCAGUGCa--GGCGCUa -5'
9613 5' -52.6 NC_002577.1 + 143215 0.68 0.94437
Target:  5'- -aGGAcCAUGggGUCGCGUCCGgGAg -3'
miRNA:   3'- ucUCUuGUACagCAGUGCAGGCgCUa -5'
9613 5' -52.6 NC_002577.1 + 104421 0.68 0.939691
Target:  5'- aGGGGGAUAUGUa--UACGUCCGCGc- -3'
miRNA:   3'- -UCUCUUGUACAgcaGUGCAGGCGCua -5'
9613 5' -52.6 NC_002577.1 + 160350 0.69 0.934766
Target:  5'- aAGAGGcCGcGUCG--GCGUCCGCGAg -3'
miRNA:   3'- -UCUCUuGUaCAGCagUGCAGGCGCUa -5'
9613 5' -52.6 NC_002577.1 + 136987 0.69 0.934766
Target:  5'- aAGAGGcCGcGUCG--GCGUCCGCGAg -3'
miRNA:   3'- -UCUCUuGUaCAGCagUGCAGGCGCUa -5'
9613 5' -52.6 NC_002577.1 + 4791 0.69 0.906426
Target:  5'- cGGGAcggcGCGgcGUCGUCGCGcgCCGCGGa -3'
miRNA:   3'- uCUCU----UGUa-CAGCAGUGCa-GGCGCUa -5'
9613 5' -52.6 NC_002577.1 + 128822 0.69 0.906426
Target:  5'- cGGGAcggcGCGgcGUCGUCGCGcgCCGCGGa -3'
miRNA:   3'- uCUCU----UGUa-CAGCAGUGCa-GGCGCUa -5'
9613 5' -52.6 NC_002577.1 + 122634 0.7 0.872023
Target:  5'- cGAGAACGUcGUCuacggcUCGCGUUCGCGGg -3'
miRNA:   3'- uCUCUUGUA-CAGc-----AGUGCAGGCGCUa -5'
9613 5' -52.6 NC_002577.1 + 10980 0.7 0.872023
Target:  5'- cGAGAACGUcGUCuacggcUCGCGUUCGCGGg -3'
miRNA:   3'- uCUCUUGUA-CAGc-----AGUGCAGGCGCUa -5'
9613 5' -52.6 NC_002577.1 + 137140 0.71 0.840466
Target:  5'- cGAGGGCcgGUCG-CGC-UCCGCGGa -3'
miRNA:   3'- uCUCUUGuaCAGCaGUGcAGGCGCUa -5'
9613 5' -52.6 NC_002577.1 + 160198 0.71 0.840466
Target:  5'- cGAGGGCcgGUCG-CGC-UCCGCGGa -3'
miRNA:   3'- uCUCUUGuaCAGCaGUGcAGGCGCUa -5'
9613 5' -52.6 NC_002577.1 + 57817 1.05 0.011094
Target:  5'- cAGAGAACAUGUCGUCACGUCCGCGAUc -3'
miRNA:   3'- -UCUCUUGUACAGCAGUGCAGGCGCUA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.