Results 21 - 40 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9614 | 3' | -60.6 | NC_002577.1 | + | 160339 | 0.68 | 0.622084 |
Target: 5'- uCGGCGUcCGCGAgaaGGCgCGCCAcgcguugcagccgucGGGCc -3' miRNA: 3'- uGUCGCAaGUGCU---CCGgGCGGU---------------CCCG- -5' |
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9614 | 3' | -60.6 | NC_002577.1 | + | 136998 | 0.68 | 0.622083 |
Target: 5'- uCGGCGUcCGCGAgaaGGCgCGCCAcgcguugcagccgucGGGCc -3' miRNA: 3'- uGUCGCAaGUGCU---CCGgGCGGU---------------CCCG- -5' |
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9614 | 3' | -60.6 | NC_002577.1 | + | 49683 | 0.68 | 0.618129 |
Target: 5'- cACAGCGgcgagaCGCGcauAGGCgUGCC-GGGCa -3' miRNA: 3'- -UGUCGCaa----GUGC---UCCGgGCGGuCCCG- -5' |
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9614 | 3' | -60.6 | NC_002577.1 | + | 126687 | 0.68 | 0.598391 |
Target: 5'- cCGGUGgaugagUCGCGAuGGCCgGaCGGGGCc -3' miRNA: 3'- uGUCGCa-----AGUGCU-CCGGgCgGUCCCG- -5' |
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9614 | 3' | -60.6 | NC_002577.1 | + | 6927 | 0.68 | 0.598391 |
Target: 5'- cCGGUGgaugagUCGCGAuGGCCgGaCGGGGCc -3' miRNA: 3'- uGUCGCa-----AGUGCU-CCGGgCgGUCCCG- -5' |
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9614 | 3' | -60.6 | NC_002577.1 | + | 157419 | 0.69 | 0.549557 |
Target: 5'- uCGGCaGUUCGauagaccccggUGAGGUCCGCagAGGGCu -3' miRNA: 3'- uGUCG-CAAGU-----------GCUCCGGGCGg-UCCCG- -5' |
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9614 | 3' | -60.6 | NC_002577.1 | + | 139918 | 0.69 | 0.549557 |
Target: 5'- uCGGCaGUUCGauagaccccggUGAGGUCCGCagAGGGCu -3' miRNA: 3'- uGUCG-CAAGU-----------GCUCCGGGCGg-UCCCG- -5' |
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9614 | 3' | -60.6 | NC_002577.1 | + | 30567 | 0.69 | 0.549557 |
Target: 5'- gGCGGCGgaaaaguaACG-GGCCCGUCGGauuGGCg -3' miRNA: 3'- -UGUCGCaag-----UGCuCCGGGCGGUC---CCG- -5' |
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9614 | 3' | -60.6 | NC_002577.1 | + | 158851 | 0.69 | 0.530353 |
Target: 5'- -gAGCGaagggUACGAGGCCgggggagGCCGGGGUa -3' miRNA: 3'- ugUCGCaa---GUGCUCCGGg------CGGUCCCG- -5' |
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9614 | 3' | -60.6 | NC_002577.1 | + | 134024 | 0.69 | 0.530352 |
Target: 5'- cGCAuGCGcgCACG-GGUCCGCUAcgcauuuccGGGCg -3' miRNA: 3'- -UGU-CGCaaGUGCuCCGGGCGGU---------CCCG- -5' |
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9614 | 3' | -60.6 | NC_002577.1 | + | 138487 | 0.69 | 0.530352 |
Target: 5'- -gAGCGaagggUACGAGGCCgggggagGCCGGGGUa -3' miRNA: 3'- ugUCGCaa---GUGCUCCGGg------CGGUCCCG- -5' |
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9614 | 3' | -60.6 | NC_002577.1 | + | 124302 | 0.69 | 0.520842 |
Target: 5'- cCAGaCGUUUGCGAcgcuaGGCUgGcCCGGGGCg -3' miRNA: 3'- uGUC-GCAAGUGCU-----CCGGgC-GGUCCCG- -5' |
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9614 | 3' | -60.6 | NC_002577.1 | + | 163303 | 0.69 | 0.520842 |
Target: 5'- cGCAuGCGcgCACG-GGUCCGCUAcgcauuucGGGCg -3' miRNA: 3'- -UGU-CGCaaGUGCuCCGGGCGGU--------CCCG- -5' |
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9614 | 3' | -60.6 | NC_002577.1 | + | 9312 | 0.69 | 0.520841 |
Target: 5'- cCAGaCGUUUGCGAcgcuaGGCUgGcCCGGGGCg -3' miRNA: 3'- uGUC-GCAAGUGCU-----CCGGgC-GGUCCCG- -5' |
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9614 | 3' | -60.6 | NC_002577.1 | + | 121947 | 0.7 | 0.511398 |
Target: 5'- -aGGCGccgUC-CGAGG-CCGCCGGGGa -3' miRNA: 3'- ugUCGCa--AGuGCUCCgGGCGGUCCCg -5' |
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9614 | 3' | -60.6 | NC_002577.1 | + | 11666 | 0.7 | 0.511398 |
Target: 5'- -aGGCGccgUC-CGAGG-CCGCCGGGGa -3' miRNA: 3'- ugUCGCa--AGuGCUCCgGGCGGUCCCg -5' |
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9614 | 3' | -60.6 | NC_002577.1 | + | 83066 | 0.7 | 0.511398 |
Target: 5'- -aAGCaUUUACGAGGCCCGCCcacuuuAGcGCg -3' miRNA: 3'- ugUCGcAAGUGCUCCGGGCGG------UCcCG- -5' |
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9614 | 3' | -60.6 | NC_002577.1 | + | 162447 | 0.7 | 0.49273 |
Target: 5'- uACGGCGaaCGCGcccgcGGGCUCGCCGGcGCu -3' miRNA: 3'- -UGUCGCaaGUGC-----UCCGGGCGGUCcCG- -5' |
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9614 | 3' | -60.6 | NC_002577.1 | + | 134880 | 0.7 | 0.49273 |
Target: 5'- uACGGCGaaCGCGcccgcGGGCUCGCCGGcGCu -3' miRNA: 3'- -UGUCGCaaGUGC-----UCCGGGCGGUCcCG- -5' |
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9614 | 3' | -60.6 | NC_002577.1 | + | 33275 | 0.71 | 0.447521 |
Target: 5'- -aAG-GUUCGCGAGGCCUGUaccuGGGGUu -3' miRNA: 3'- ugUCgCAAGUGCUCCGGGCGg---UCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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