Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9615 | 5' | -55 | NC_002577.1 | + | 6612 | 0.65 | 0.930551 |
Target: 5'- aGGGAUACGuGGUCAauCUUGGCGAu- -3' miRNA: 3'- cUCCUAUGUuCCGGUc-GAGCCGCUuu -5' |
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9615 | 5' | -55 | NC_002577.1 | + | 59413 | 1.06 | 0.004805 |
Target: 5'- gGAGGAUACAAGGCCAGCUCGGCGAAAa -3' miRNA: 3'- -CUCCUAUGUUCCGGUCGAGCCGCUUU- -5' |
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9615 | 5' | -55 | NC_002577.1 | + | 1561 | 0.7 | 0.730054 |
Target: 5'- -cGGAUugAGGGUCggGGC-CGGCGAGGg -3' miRNA: 3'- cuCCUAugUUCCGG--UCGaGCCGCUUU- -5' |
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9615 | 5' | -55 | NC_002577.1 | + | 158846 | 0.69 | 0.797729 |
Target: 5'- aAGGGUACGAGGCCGGgggaGGcCGggGu -3' miRNA: 3'- cUCCUAUGUUCCGGUCgag-CC-GCuuU- -5' |
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9615 | 5' | -55 | NC_002577.1 | + | 163229 | 0.68 | 0.841577 |
Target: 5'- cGGGGAUGCAGcGUgCGGCUCGGCc--- -3' miRNA: 3'- -CUCCUAUGUUcCG-GUCGAGCCGcuuu -5' |
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9615 | 5' | -55 | NC_002577.1 | + | 73393 | 0.68 | 0.841577 |
Target: 5'- cGAGGuuaucgugccccGUGCAaaucaAGGCC-GUUCGGCGggGa -3' miRNA: 3'- -CUCC------------UAUGU-----UCCGGuCGAGCCGCuuU- -5' |
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9615 | 5' | -55 | NC_002577.1 | + | 160599 | 0.68 | 0.849781 |
Target: 5'- gGGGGGUGgGGGGCCuugugcAGCU-GGCGAc- -3' miRNA: 3'- -CUCCUAUgUUCCGG------UCGAgCCGCUuu -5' |
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9615 | 5' | -55 | NC_002577.1 | + | 24462 | 0.68 | 0.849781 |
Target: 5'- uGAGGAUcgcACGAGGCguCAGCUCGcGCc--- -3' miRNA: 3'- -CUCCUA---UGUUCCG--GUCGAGC-CGcuuu -5' |
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9615 | 5' | -55 | NC_002577.1 | + | 156160 | 0.68 | 0.85778 |
Target: 5'- -cGGggGCAcGGCCAcGCUCGGUGu-- -3' miRNA: 3'- cuCCuaUGUuCCGGU-CGAGCCGCuuu -5' |
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9615 | 5' | -55 | NC_002577.1 | + | 138469 | 0.67 | 0.865565 |
Target: 5'- gGAGGAcgGCGcGGCCgcGGC-CGGCGGGc -3' miRNA: 3'- -CUCCUa-UGUuCCGG--UCGaGCCGCUUu -5' |
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9615 | 5' | -55 | NC_002577.1 | + | 142475 | 0.65 | 0.930551 |
Target: 5'- gGGGGggGgGGGGCgCGGgUCGGgGAAAg -3' miRNA: 3'- -CUCCuaUgUUCCG-GUCgAGCCgCUUU- -5' |
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9615 | 5' | -55 | NC_002577.1 | + | 10917 | 0.66 | 0.925155 |
Target: 5'- cGAGGGcauCGAacuGGCCgAGCUCGGCa--- -3' miRNA: 3'- -CUCCUau-GUU---CCGG-UCGAGCCGcuuu -5' |
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9615 | 5' | -55 | NC_002577.1 | + | 123089 | 0.66 | 0.925155 |
Target: 5'- -cGGGUGCGGGGCCGGggggaaagUCGGgGGGc -3' miRNA: 3'- cuCCUAUGUUCCGGUCg-------AGCCgCUUu -5' |
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9615 | 5' | -55 | NC_002577.1 | + | 80407 | 0.66 | 0.91951 |
Target: 5'- uGAGGAauuUAC-GGGCUuuuuAGCUCGGCa--- -3' miRNA: 3'- -CUCCU---AUGuUCCGG----UCGAGCCGcuuu -5' |
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9615 | 5' | -55 | NC_002577.1 | + | 11559 | 0.66 | 0.901082 |
Target: 5'- cGGGAUcgcucccgACGGGGCUcucGUUCGGCGAu- -3' miRNA: 3'- cUCCUA--------UGUUCCGGu--CGAGCCGCUuu -5' |
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9615 | 5' | -55 | NC_002577.1 | + | 148340 | 0.67 | 0.887577 |
Target: 5'- -cGGGUACAGacgaauacgcGGCCcuccgAGCUgGGCGGAAu -3' miRNA: 3'- cuCCUAUGUU----------CCGG-----UCGAgCCGCUUU- -5' |
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9615 | 5' | -55 | NC_002577.1 | + | 154863 | 0.65 | 0.930551 |
Target: 5'- gGGGGggGgGGGGCgCGGgUCGGgGAAAg -3' miRNA: 3'- -CUCCuaUgUUCCG-GUCgAGCCgCUUU- -5' |
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9615 | 5' | -55 | NC_002577.1 | + | 138492 | 0.69 | 0.797729 |
Target: 5'- aAGGGUACGAGGCCGGgggaGGcCGggGu -3' miRNA: 3'- cUCCUAUGUUCCGGUCgag-CC-GCuuU- -5' |
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9615 | 5' | -55 | NC_002577.1 | + | 134099 | 0.68 | 0.841577 |
Target: 5'- cGGGGAUGCAGcGUgCGGCUCGGCc--- -3' miRNA: 3'- -CUCCUAUGUUcCG-GUCGAGCCGcuuu -5' |
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9615 | 5' | -55 | NC_002577.1 | + | 136738 | 0.68 | 0.849781 |
Target: 5'- gGGGGGUGgGGGGCCuugugcAGCU-GGCGAc- -3' miRNA: 3'- -CUCCUAUgUUCCGG------UCGAgCCGCUuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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