Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9616 | 3' | -53.9 | NC_002577.1 | + | 16030 | 0.67 | 0.941235 |
Target: 5'- uGGGGCACAgauaggacgGGUGCGACCucaCAGUCUUc -3' miRNA: 3'- -UUCUGUGU---------UCAUGCUGGc--GUCGGAGc -5' |
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9616 | 3' | -53.9 | NC_002577.1 | + | 8176 | 0.69 | 0.867065 |
Target: 5'- cGGACACcGGUGCGuCCG-GGCgCUCGg -3' miRNA: 3'- uUCUGUGuUCAUGCuGGCgUCG-GAGC- -5' |
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9616 | 3' | -53.9 | NC_002577.1 | + | 123800 | 0.69 | 0.843327 |
Target: 5'- cGGGAUccggaaucccguGCAGGUACGcACCGCGGgCUCc -3' miRNA: 3'- -UUCUG------------UGUUCAUGC-UGGCGUCgGAGc -5' |
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9616 | 3' | -53.9 | NC_002577.1 | + | 60204 | 0.7 | 0.817804 |
Target: 5'- cGGAuagccCAUggGUuCGGCgGCGGCCUCGg -3' miRNA: 3'- uUCU-----GUGuuCAuGCUGgCGUCGGAGC- -5' |
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9616 | 3' | -53.9 | NC_002577.1 | + | 138305 | 0.71 | 0.752561 |
Target: 5'- ---cCGCGGccGCGGCCGCGGCCUCu -3' miRNA: 3'- uucuGUGUUcaUGCUGGCGUCGGAGc -5' |
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9616 | 3' | -53.9 | NC_002577.1 | + | 61262 | 0.73 | 0.661243 |
Target: 5'- -cGACGCAGGUGCaauucACCGCAGCUgaacgCGg -3' miRNA: 3'- uuCUGUGUUCAUGc----UGGCGUCGGa----GC- -5' |
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9616 | 3' | -53.9 | NC_002577.1 | + | 1131 | 0.74 | 0.595722 |
Target: 5'- gGGGACGCAGG-ACgcuugggaaccgcgGACCGCAGCCUUu -3' miRNA: 3'- -UUCUGUGUUCaUG--------------CUGGCGUCGGAGc -5' |
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9616 | 3' | -53.9 | NC_002577.1 | + | 158869 | 0.68 | 0.895632 |
Target: 5'- gAGGAC---GGcGCGGCCGCGGCCggCGg -3' miRNA: 3'- -UUCUGuguUCaUGCUGGCGUCGGa-GC- -5' |
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9616 | 3' | -53.9 | NC_002577.1 | + | 140924 | 0.66 | 0.958165 |
Target: 5'- cAGGAcCGCGGGgcCG-CCGCGGCCguuUCGu -3' miRNA: 3'- -UUCU-GUGUUCauGCuGGCGUCGG---AGC- -5' |
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9616 | 3' | -53.9 | NC_002577.1 | + | 44056 | 0.66 | 0.945828 |
Target: 5'- cGGGAUAgAAGUACGuGCCGgCAGCgaUCGu -3' miRNA: 3'- -UUCUGUgUUCAUGC-UGGC-GUCGg-AGC- -5' |
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9616 | 3' | -53.9 | NC_002577.1 | + | 35360 | 0.66 | 0.94538 |
Target: 5'- gAGGACACucGUcguuuucGCGGCCGC-GCCcCGg -3' miRNA: 3'- -UUCUGUGuuCA-------UGCUGGCGuCGGaGC- -5' |
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9616 | 3' | -53.9 | NC_002577.1 | + | 2838 | 0.66 | 0.945828 |
Target: 5'- cAGACACcgGAGUccacaGCGACCGCGauuuCCUCu -3' miRNA: 3'- uUCUGUG--UUCA-----UGCUGGCGUc---GGAGc -5' |
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9616 | 3' | -53.9 | NC_002577.1 | + | 135010 | 0.66 | 0.965227 |
Target: 5'- -uGACGCAuccgcacgGCaGACCGCGGCC-CGu -3' miRNA: 3'- uuCUGUGUuca-----UG-CUGGCGUCGGaGC- -5' |
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9616 | 3' | -53.9 | NC_002577.1 | + | 125437 | 0.69 | 0.867065 |
Target: 5'- cGGACACcGGUGCGuCCG-GGCgCUCGg -3' miRNA: 3'- uUCUGUGuUCAUGCuGGCgUCG-GAGC- -5' |
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9616 | 3' | -53.9 | NC_002577.1 | + | 156413 | 0.66 | 0.958165 |
Target: 5'- cAGGAcCGCGGGgcCG-CCGCGGCCguuUCGu -3' miRNA: 3'- -UUCU-GUGUUCauGCuGGCGUCGG---AGC- -5' |
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9616 | 3' | -53.9 | NC_002577.1 | + | 57855 | 0.67 | 0.941235 |
Target: 5'- cGGGCGCu--UGCGcCCGCgccGGCCUCGu -3' miRNA: 3'- uUCUGUGuucAUGCuGGCG---UCGGAGC- -5' |
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9616 | 3' | -53.9 | NC_002577.1 | + | 153197 | 0.67 | 0.925435 |
Target: 5'- gAAGACGCAAGcuccgcaaaagcUuaccguaguuacgACGGCCGCGGCCa-- -3' miRNA: 3'- -UUCUGUGUUC------------A-------------UGCUGGCGUCGGagc -5' |
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9616 | 3' | -53.9 | NC_002577.1 | + | 66263 | 1.06 | 0.006795 |
Target: 5'- aAAGACACAAGUACGACCGCAGCCUCGu -3' miRNA: 3'- -UUCUGUGUUCAUGCUGGCGUCGGAGC- -5' |
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9616 | 3' | -53.9 | NC_002577.1 | + | 132482 | 0.74 | 0.595722 |
Target: 5'- gGGGACGCAGG-ACgcuugggaaccgcgGACCGCAGCCUUu -3' miRNA: 3'- -UUCUGUGUUCaUG--------------CUGGCGUCGGAGc -5' |
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9616 | 3' | -53.9 | NC_002577.1 | + | 159033 | 0.71 | 0.752561 |
Target: 5'- ---cCGCGGccGCGGCCGCGGCCUCu -3' miRNA: 3'- uucuGUGUUcaUGCUGGCGUCGGAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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