Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9616 | 3' | -53.9 | NC_002577.1 | + | 60204 | 0.7 | 0.817804 |
Target: 5'- cGGAuagccCAUggGUuCGGCgGCGGCCUCGg -3' miRNA: 3'- uUCU-----GUGuuCAuGCUGgCGUCGGAGC- -5' |
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9616 | 3' | -53.9 | NC_002577.1 | + | 159033 | 0.71 | 0.752561 |
Target: 5'- ---cCGCGGccGCGGCCGCGGCCUCu -3' miRNA: 3'- uucuGUGUUcaUGCUGGCGUCGGAGc -5' |
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9616 | 3' | -53.9 | NC_002577.1 | + | 138305 | 0.71 | 0.752561 |
Target: 5'- ---cCGCGGccGCGGCCGCGGCCUCu -3' miRNA: 3'- uucuGUGUUcaUGCUGGCGUCGGAGc -5' |
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9616 | 3' | -53.9 | NC_002577.1 | + | 61262 | 0.73 | 0.661243 |
Target: 5'- -cGACGCAGGUGCaauucACCGCAGCUgaacgCGg -3' miRNA: 3'- uuCUGUGUUCAUGc----UGGCGUCGGa----GC- -5' |
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9616 | 3' | -53.9 | NC_002577.1 | + | 1131 | 0.74 | 0.595722 |
Target: 5'- gGGGACGCAGG-ACgcuugggaaccgcgGACCGCAGCCUUu -3' miRNA: 3'- -UUCUGUGUUCaUG--------------CUGGCGUCGGAGc -5' |
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9616 | 3' | -53.9 | NC_002577.1 | + | 132482 | 0.74 | 0.595722 |
Target: 5'- gGGGACGCAGG-ACgcuugggaaccgcgGACCGCAGCCUUu -3' miRNA: 3'- -UUCUGUGUUCaUG--------------CUGGCGUCGGAGc -5' |
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9616 | 3' | -53.9 | NC_002577.1 | + | 66263 | 1.06 | 0.006795 |
Target: 5'- aAAGACACAAGUACGACCGCAGCCUCGu -3' miRNA: 3'- -UUCUGUGUUCAUGCUGGCGUCGGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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