Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9616 | 5' | -53 | NC_002577.1 | + | 107532 | 0.67 | 0.96309 |
Target: 5'- uUCUgcggAGCCGUaGCUGCug-UGGCCc -3' miRNA: 3'- -AGGuuuaUCGGCG-CGGCGuaaACCGG- -5' |
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9616 | 5' | -53 | NC_002577.1 | + | 80330 | 0.67 | 0.959519 |
Target: 5'- gUCCAAGUucccGCCGCGggcauCCGCGU---GCCu -3' miRNA: 3'- -AGGUUUAu---CGGCGC-----GGCGUAaacCGG- -5' |
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9616 | 5' | -53 | NC_002577.1 | + | 17476 | 0.67 | 0.955716 |
Target: 5'- aCCGAAaacGuCCGCGCUGaauugUGGCCu -3' miRNA: 3'- aGGUUUau-C-GGCGCGGCguaa-ACCGG- -5' |
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9616 | 5' | -53 | NC_002577.1 | + | 163201 | 0.67 | 0.955716 |
Target: 5'- cCUAGcgAGCaugCGCGCgGCGgacccUGGCCa -3' miRNA: 3'- aGGUUuaUCG---GCGCGgCGUaa---ACCGG- -5' |
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9616 | 5' | -53 | NC_002577.1 | + | 35565 | 0.67 | 0.955716 |
Target: 5'- gCCAGAaAGCCGgGgCGC----GGCCg -3' miRNA: 3'- aGGUUUaUCGGCgCgGCGuaaaCCGG- -5' |
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9616 | 5' | -53 | NC_002577.1 | + | 134127 | 0.67 | 0.955716 |
Target: 5'- cCUAGcgAGCaugCGCGCgGCGgacccUGGCCa -3' miRNA: 3'- aGGUUuaUCG---GCGCGgCGUaa---ACCGG- -5' |
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9616 | 5' | -53 | NC_002577.1 | + | 65953 | 0.68 | 0.942882 |
Target: 5'- uUCCGAcgGGCUG-GCCGaug-UGGCUu -3' miRNA: 3'- -AGGUUuaUCGGCgCGGCguaaACCGG- -5' |
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9616 | 5' | -53 | NC_002577.1 | + | 71588 | 0.68 | 0.933104 |
Target: 5'- cUCCGc-UAGCCGUGCaCGUAg--GGCa -3' miRNA: 3'- -AGGUuuAUCGGCGCG-GCGUaaaCCGg -5' |
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9616 | 5' | -53 | NC_002577.1 | + | 86217 | 0.68 | 0.933104 |
Target: 5'- gCCAAuGUAcGgCGCGCCGUAaucccUGGCCc -3' miRNA: 3'- aGGUU-UAU-CgGCGCGGCGUaa---ACCGG- -5' |
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9616 | 5' | -53 | NC_002577.1 | + | 105048 | 0.68 | 0.932589 |
Target: 5'- aUCGAAacgcUAGCgUGCGCaCGCAUUauucuagggguucUGGCCg -3' miRNA: 3'- aGGUUU----AUCG-GCGCG-GCGUAA-------------ACCGG- -5' |
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9616 | 5' | -53 | NC_002577.1 | + | 126918 | 0.68 | 0.927842 |
Target: 5'- aUCgCAAAUAGCC-CGCaaaagaaggauCGCAUUUccGGCCc -3' miRNA: 3'- -AG-GUUUAUCGGcGCG-----------GCGUAAA--CCGG- -5' |
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9616 | 5' | -53 | NC_002577.1 | + | 6696 | 0.68 | 0.927842 |
Target: 5'- aUCgCAAAUAGCC-CGCaaaagaaggauCGCAUUUccGGCCc -3' miRNA: 3'- -AG-GUUUAUCGGcGCG-----------GCGUAAA--CCGG- -5' |
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9616 | 5' | -53 | NC_002577.1 | + | 132414 | 0.69 | 0.897817 |
Target: 5'- uUCCAAAaAGCCgGUGUgGCGgacucGGCCa -3' miRNA: 3'- -AGGUUUaUCGG-CGCGgCGUaaa--CCGG- -5' |
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9616 | 5' | -53 | NC_002577.1 | + | 1200 | 0.69 | 0.897817 |
Target: 5'- uUCCAAAaAGCCgGUGUgGCGgacucGGCCa -3' miRNA: 3'- -AGGUUUaUCGG-CGCGgCGUaaa--CCGG- -5' |
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9616 | 5' | -53 | NC_002577.1 | + | 26998 | 0.7 | 0.884105 |
Target: 5'- cUCCGAAUAGCUGcCGaCgGCcUUucugaUGGCCg -3' miRNA: 3'- -AGGUUUAUCGGC-GC-GgCGuAA-----ACCGG- -5' |
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9616 | 5' | -53 | NC_002577.1 | + | 111659 | 0.7 | 0.884105 |
Target: 5'- -aCGGAUGGCCGCGC-GCAc--GGUCu -3' miRNA: 3'- agGUUUAUCGGCGCGgCGUaaaCCGG- -5' |
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9616 | 5' | -53 | NC_002577.1 | + | 40302 | 0.7 | 0.876899 |
Target: 5'- gUCUAGAUAGCguCGCGUCGCcgUUaaugcgaggGGCUa -3' miRNA: 3'- -AGGUUUAUCG--GCGCGGCGuaAA---------CCGG- -5' |
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9616 | 5' | -53 | NC_002577.1 | + | 101314 | 0.7 | 0.845856 |
Target: 5'- cCCAAA-AGCCGUGCgcaaGCAUcgUGGCg -3' miRNA: 3'- aGGUUUaUCGGCGCGg---CGUAa-ACCGg -5' |
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9616 | 5' | -53 | NC_002577.1 | + | 20013 | 0.72 | 0.797091 |
Target: 5'- gCCGAAUAccauGCCGCGCCGCucuccuuucuGCCc -3' miRNA: 3'- aGGUUUAU----CGGCGCGGCGuaaac-----CGG- -5' |
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9616 | 5' | -53 | NC_002577.1 | + | 16683 | 0.72 | 0.793404 |
Target: 5'- gUUC-AGUAGUCGCGCUGCGcaaUGGUCg -3' miRNA: 3'- -AGGuUUAUCGGCGCGGCGUaa-ACCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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