Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9617 | 3' | -57.2 | NC_002577.1 | + | 116830 | 0.67 | 0.809262 |
Target: 5'- uCAGUACaCUGUUUauuggGCCCCCGGcguGCg -3' miRNA: 3'- uGUCGUG-GAUAAG-----CGGGGGCCau-CGg -5' |
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9617 | 3' | -57.2 | NC_002577.1 | + | 137875 | 0.67 | 0.809262 |
Target: 5'- cCAGCGCCgaaAUgcgaCGCCCCuCGGcaucGCCu -3' miRNA: 3'- uGUCGUGGa--UAa---GCGGGG-GCCau--CGG- -5' |
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9617 | 3' | -57.2 | NC_002577.1 | + | 20362 | 0.67 | 0.809262 |
Target: 5'- aGCGcGCACUUAUUagcCGCCUCCGGgauCCg -3' miRNA: 3'- -UGU-CGUGGAUAA---GCGGGGGCCaucGG- -5' |
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9617 | 3' | -57.2 | NC_002577.1 | + | 157138 | 0.69 | 0.722748 |
Target: 5'- gGCGGCAgacguacuggaagcCCg---CGCCCCUGGUacgggGGCCc -3' miRNA: 3'- -UGUCGU--------------GGauaaGCGGGGGCCA-----UCGG- -5' |
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9617 | 3' | -57.2 | NC_002577.1 | + | 140200 | 0.69 | 0.722748 |
Target: 5'- gGCGGCAgacguacuggaagcCCg---CGCCCCUGGUacgggGGCCc -3' miRNA: 3'- -UGUCGU--------------GGauaaGCGGGGGCCA-----UCGG- -5' |
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9617 | 3' | -57.2 | NC_002577.1 | + | 136416 | 0.69 | 0.706011 |
Target: 5'- cCGGCGCCcgGcUCGcCCCCCGGgGGaCCc -3' miRNA: 3'- uGUCGUGGa-UaAGC-GGGGGCCaUC-GG- -5' |
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9617 | 3' | -57.2 | NC_002577.1 | + | 160921 | 0.69 | 0.706011 |
Target: 5'- cCGGCGCCcgGcUCGcCCCCCGGgGGaCCc -3' miRNA: 3'- uGUCGUGGa-UaAGC-GGGGGCCaUC-GG- -5' |
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9617 | 3' | -57.2 | NC_002577.1 | + | 42410 | 0.7 | 0.686097 |
Target: 5'- uACAGCACUcAUUCGa-CCgGGUAGCg -3' miRNA: 3'- -UGUCGUGGaUAAGCggGGgCCAUCGg -5' |
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9617 | 3' | -57.2 | NC_002577.1 | + | 103531 | 0.71 | 0.625575 |
Target: 5'- cUAGCGgCg---CGCCCCCGGUA-CCa -3' miRNA: 3'- uGUCGUgGauaaGCGGGGGCCAUcGG- -5' |
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9617 | 3' | -57.2 | NC_002577.1 | + | 142538 | 0.71 | 0.615459 |
Target: 5'- cGCAGCGCCUAUU-GCCCC--GUcGCCu -3' miRNA: 3'- -UGUCGUGGAUAAgCGGGGgcCAuCGG- -5' |
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9617 | 3' | -57.2 | NC_002577.1 | + | 122557 | 0.71 | 0.615459 |
Target: 5'- gGCGGCGuuUcua-GCCCCCGGcgcgGGCCg -3' miRNA: 3'- -UGUCGUggAuaagCGGGGGCCa---UCGG- -5' |
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9617 | 3' | -57.2 | NC_002577.1 | + | 154798 | 0.71 | 0.615459 |
Target: 5'- cGCAGCGCCUAUU-GCCCC--GUcGCCu -3' miRNA: 3'- -UGUCGUGGAUAAgCGGGGgcCAuCGG- -5' |
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9617 | 3' | -57.2 | NC_002577.1 | + | 11056 | 0.71 | 0.615459 |
Target: 5'- gGCGGCGuuUcua-GCCCCCGGcgcgGGCCg -3' miRNA: 3'- -UGUCGUggAuaagCGGGGGCCa---UCGG- -5' |
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9617 | 3' | -57.2 | NC_002577.1 | + | 87080 | 0.71 | 0.615459 |
Target: 5'- aGCAGCAUCgagagCGCCCCCGccgucauuuaaGUcGCCa -3' miRNA: 3'- -UGUCGUGGauaa-GCGGGGGC-----------CAuCGG- -5' |
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9617 | 3' | -57.2 | NC_002577.1 | + | 38549 | 0.71 | 0.585215 |
Target: 5'- cGCAGCGC--AUUUGUCgCCCGGcgGGCCg -3' miRNA: 3'- -UGUCGUGgaUAAGCGG-GGGCCa-UCGG- -5' |
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9617 | 3' | -57.2 | NC_002577.1 | + | 154705 | 0.72 | 0.525784 |
Target: 5'- cCGGCACCg---CGCUCCUGGUAGgUg -3' miRNA: 3'- uGUCGUGGauaaGCGGGGGCCAUCgG- -5' |
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9617 | 3' | -57.2 | NC_002577.1 | + | 142631 | 0.72 | 0.525784 |
Target: 5'- cCGGCACCg---CGCUCCUGGUAGgUg -3' miRNA: 3'- uGUCGUGGauaaGCGGGGGCCAUCgG- -5' |
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9617 | 3' | -57.2 | NC_002577.1 | + | 155370 | 0.72 | 0.524811 |
Target: 5'- gGCGuCGCUaggagaaUGUUUGCCCCCGGggAGCCu -3' miRNA: 3'- -UGUcGUGG-------AUAAGCGGGGGCCa-UCGG- -5' |
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9617 | 3' | -57.2 | NC_002577.1 | + | 141968 | 0.72 | 0.524811 |
Target: 5'- gGCGuCGCUaggagaaUGUUUGCCCCCGGggAGCCu -3' miRNA: 3'- -UGUcGUGG-------AUAAGCGGGGGCCa-UCGG- -5' |
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9617 | 3' | -57.2 | NC_002577.1 | + | 3041 | 0.73 | 0.516085 |
Target: 5'- cGCAGCGCCU--UCGUCCCgGaGUAgagcGCCa -3' miRNA: 3'- -UGUCGUGGAuaAGCGGGGgC-CAU----CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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