Results 21 - 40 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9617 | 5' | -47.7 | NC_002577.1 | + | 11656 | 0.67 | 0.999088 |
Target: 5'- cGAGGCcGCCGGgGAGgAGGU-UGUGGg -3' miRNA: 3'- -CUUUGuUGGCCgCUCgUUUAuACGCU- -5' |
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9617 | 5' | -47.7 | NC_002577.1 | + | 52247 | 0.67 | 0.999088 |
Target: 5'- aGGAGCAucuacGCCGGCGAGCG-----GCa- -3' miRNA: 3'- -CUUUGU-----UGGCCGCUCGUuuauaCGcu -5' |
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9617 | 5' | -47.7 | NC_002577.1 | + | 42777 | 0.67 | 0.998882 |
Target: 5'- -uAGCGAUCGGCGAGCuggcAGUucagcAUGCa- -3' miRNA: 3'- cuUUGUUGGCCGCUCGu---UUA-----UACGcu -5' |
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9617 | 5' | -47.7 | NC_002577.1 | + | 63429 | 0.68 | 0.99801 |
Target: 5'- aGAuGCGAuCCGa-GAGUAGGUGUGCGAa -3' miRNA: 3'- -CUuUGUU-GGCcgCUCGUUUAUACGCU- -5' |
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9617 | 5' | -47.7 | NC_002577.1 | + | 135435 | 0.68 | 0.99801 |
Target: 5'- -cGACGACUGGCuGGGC----GUGCGGa -3' miRNA: 3'- cuUUGUUGGCCG-CUCGuuuaUACGCU- -5' |
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9617 | 5' | -47.7 | NC_002577.1 | + | 161903 | 0.68 | 0.99801 |
Target: 5'- -cGACGACUGGCuGGGC----GUGCGGa -3' miRNA: 3'- cuUUGUUGGCCG-CUCGuuuaUACGCU- -5' |
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9617 | 5' | -47.7 | NC_002577.1 | + | 65052 | 0.68 | 0.997156 |
Target: 5'- -cAACGGCCGGCaaaAGCGAugcAUGUGCu- -3' miRNA: 3'- cuUUGUUGGCCGc--UCGUU---UAUACGcu -5' |
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9617 | 5' | -47.7 | NC_002577.1 | + | 155510 | 0.69 | 0.996019 |
Target: 5'- -cGACGcgcuCCuGCGAGCGAcUGUGCGGu -3' miRNA: 3'- cuUUGUu---GGcCGCUCGUUuAUACGCU- -5' |
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9617 | 5' | -47.7 | NC_002577.1 | + | 7942 | 0.69 | 0.996019 |
Target: 5'- -uAAguACCGGCGuuccgggcggucGGCGAGUcgGCGGa -3' miRNA: 3'- cuUUguUGGCCGC------------UCGUUUAuaCGCU- -5' |
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9617 | 5' | -47.7 | NC_002577.1 | + | 125672 | 0.69 | 0.996019 |
Target: 5'- -uAAguACCGGCGuuccgggcggucGGCGAGUcgGCGGa -3' miRNA: 3'- cuUUguUGGCCGC------------UCGUUUAuaCGCU- -5' |
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9617 | 5' | -47.7 | NC_002577.1 | + | 161175 | 0.7 | 0.992628 |
Target: 5'- aGAGGCGGuuGGCGAGUgcg---GCGAg -3' miRNA: 3'- -CUUUGUUggCCGCUCGuuuauaCGCU- -5' |
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9617 | 5' | -47.7 | NC_002577.1 | + | 159448 | 0.7 | 0.992628 |
Target: 5'- -uGACGGCCGcGCccGGCGAAcUGUGCGAg -3' miRNA: 3'- cuUUGUUGGC-CGc-UCGUUU-AUACGCU- -5' |
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9617 | 5' | -47.7 | NC_002577.1 | + | 137889 | 0.7 | 0.992628 |
Target: 5'- -uGACGGCCGcGCccGGCGAAcUGUGCGAg -3' miRNA: 3'- cuUUGUUGGC-CGc-UCGUUU-AUACGCU- -5' |
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9617 | 5' | -47.7 | NC_002577.1 | + | 136163 | 0.7 | 0.992628 |
Target: 5'- aGAGGCGGuuGGCGAGUgcg---GCGAg -3' miRNA: 3'- -CUUUGUUggCCGCUCGuuuauaCGCU- -5' |
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9617 | 5' | -47.7 | NC_002577.1 | + | 106141 | 0.7 | 0.992628 |
Target: 5'- cGGACuGCCGGUGAuGCGA---UGCGAg -3' miRNA: 3'- cUUUGuUGGCCGCU-CGUUuauACGCU- -5' |
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9617 | 5' | -47.7 | NC_002577.1 | + | 157316 | 0.7 | 0.99219 |
Target: 5'- aGGGCA-CCGGCGAGCGuccgacaacGCGAg -3' miRNA: 3'- cUUUGUuGGCCGCUCGUuuaua----CGCU- -5' |
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9617 | 5' | -47.7 | NC_002577.1 | + | 140021 | 0.7 | 0.99219 |
Target: 5'- aGGGCA-CCGGCGAGCGuccgacaacGCGAg -3' miRNA: 3'- cUUUGUuGGCCGCUCGUuuaua----CGCU- -5' |
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9617 | 5' | -47.7 | NC_002577.1 | + | 141827 | 0.7 | 0.988818 |
Target: 5'- -cGACAcgcuCCuGCGAGCGAcUGUGCGGu -3' miRNA: 3'- cuUUGUu---GGcCGCUCGUUuAUACGCU- -5' |
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9617 | 5' | -47.7 | NC_002577.1 | + | 137793 | 0.7 | 0.988818 |
Target: 5'- uAGACAcGCUGGCG-GCG-AUGUGCGGu -3' miRNA: 3'- cUUUGU-UGGCCGCuCGUuUAUACGCU- -5' |
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9617 | 5' | -47.7 | NC_002577.1 | + | 159544 | 0.7 | 0.988818 |
Target: 5'- uAGACAcGCUGGCG-GCG-AUGUGCGGu -3' miRNA: 3'- cUUUGU-UGGCCGCuCGUuUAUACGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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