miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9618 3' -49.4 NC_002577.1 + 8107 0.67 0.995536
Target:  5'- cGUUGuuUACCgGUUCGCGAUcGCGAUc -3'
miRNA:   3'- -UAGCuuAUGG-CGAGCGCUAuCGUUAu -5'
9618 3' -49.4 NC_002577.1 + 125507 0.67 0.995536
Target:  5'- cGUUGuuUACCgGUUCGCGAUcGCGAUc -3'
miRNA:   3'- -UAGCuuAUGG-CGAGCGCUAuCGUUAu -5'
9618 3' -49.4 NC_002577.1 + 56585 0.67 0.993912
Target:  5'- cUCGAAUAUC-CUCGCGGUcgauguGCAGUu -3'
miRNA:   3'- uAGCUUAUGGcGAGCGCUAu-----CGUUAu -5'
9618 3' -49.4 NC_002577.1 + 10647 0.67 0.993912
Target:  5'- gGUCGAGauaggACCGCUCucucguucggaaGCGG-AGCAAUAa -3'
miRNA:   3'- -UAGCUUa----UGGCGAG------------CGCUaUCGUUAU- -5'
9618 3' -49.4 NC_002577.1 + 122966 0.67 0.993912
Target:  5'- gGUCGAGauaggACCGCUCucucguucggaaGCGG-AGCAAUAa -3'
miRNA:   3'- -UAGCUUa----UGGCGAG------------CGCUaUCGUUAU- -5'
9618 3' -49.4 NC_002577.1 + 152876 0.67 0.992939
Target:  5'- uAUCGAGcaaugacgacGCCGCUCGCGGU-GUAAg- -3'
miRNA:   3'- -UAGCUUa---------UGGCGAGCGCUAuCGUUau -5'
9618 3' -49.4 NC_002577.1 + 50163 0.67 0.991845
Target:  5'- uGUCGAAcgugGCCGCUUGCGGaauaucgcAGCAGc- -3'
miRNA:   3'- -UAGCUUa---UGGCGAGCGCUa-------UCGUUau -5'
9618 3' -49.4 NC_002577.1 + 52054 0.68 0.98607
Target:  5'- --aGAAUGCCGCUCGCc--GGCGu-- -3'
miRNA:   3'- uagCUUAUGGCGAGCGcuaUCGUuau -5'
9618 3' -49.4 NC_002577.1 + 64100 0.68 0.984227
Target:  5'- uGUCG-AUGCUGC-CGCGAuauUAGCGAa- -3'
miRNA:   3'- -UAGCuUAUGGCGaGCGCU---AUCGUUau -5'
9618 3' -49.4 NC_002577.1 + 160497 0.68 0.984227
Target:  5'- cGUCGAGaACCGC-CGCGggAGCu--- -3'
miRNA:   3'- -UAGCUUaUGGCGaGCGCuaUCGuuau -5'
9618 3' -49.4 NC_002577.1 + 136840 0.68 0.984227
Target:  5'- cGUCGAGaACCGC-CGCGggAGCu--- -3'
miRNA:   3'- -UAGCUUaUGGCGaGCGCuaUCGuuau -5'
9618 3' -49.4 NC_002577.1 + 147405 0.69 0.974965
Target:  5'- -cCGAAgagACUGCUCGCGGUcaaaguAGCGGg- -3'
miRNA:   3'- uaGCUUa--UGGCGAGCGCUA------UCGUUau -5'
9618 3' -49.4 NC_002577.1 + 136620 0.7 0.958484
Target:  5'- -gCGGAgAUCGCUCGCG-UGGCGAg- -3'
miRNA:   3'- uaGCUUaUGGCGAGCGCuAUCGUUau -5'
9618 3' -49.4 NC_002577.1 + 160717 0.7 0.958484
Target:  5'- -gCGGAgAUCGCUCGCG-UGGCGAg- -3'
miRNA:   3'- uaGCUUaUGGCGAGCGCuAUCGUUau -5'
9618 3' -49.4 NC_002577.1 + 59418 0.71 0.945641
Target:  5'- ---aGGUAgCGCUCGCGAUGGCGc-- -3'
miRNA:   3'- uagcUUAUgGCGAGCGCUAUCGUuau -5'
9618 3' -49.4 NC_002577.1 + 33510 0.73 0.885595
Target:  5'- -aCGA--GCCGCUCGCGAgAGCGc-- -3'
miRNA:   3'- uaGCUuaUGGCGAGCGCUaUCGUuau -5'
9618 3' -49.4 NC_002577.1 + 110749 0.76 0.761727
Target:  5'- -aCGAAUAUCGCUCGCGuccGCAAUu -3'
miRNA:   3'- uaGCUUAUGGCGAGCGCuauCGUUAu -5'
9618 3' -49.4 NC_002577.1 + 69435 1.05 0.019119
Target:  5'- cAUCGAAUACCGCUCGCGAUAGCAAUAu -3'
miRNA:   3'- -UAGCUUAUGGCGAGCGCUAUCGUUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.