miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
962 5' -52.5 NC_000902.1 + 47790 0.66 0.879341
Target:  5'- --aUGCGGuugugaaccaGUCGCAgcauaauauucaUCCACCGCAgCCu -3'
miRNA:   3'- cugACGCC----------UAGUGU------------AGGUGGUGUaGG- -5'
962 5' -52.5 NC_000902.1 + 54451 0.66 0.87148
Target:  5'- cGAUgGCGGAUCAgCgAUUCGCuCAgGUCCu -3'
miRNA:   3'- -CUGaCGCCUAGU-G-UAGGUG-GUgUAGG- -5'
962 5' -52.5 NC_000902.1 + 49017 0.66 0.855003
Target:  5'- uGCUGCGGGUCGgCGUCaauggACaaaaACGUCUg -3'
miRNA:   3'- cUGACGCCUAGU-GUAGg----UGg---UGUAGG- -5'
962 5' -52.5 NC_000902.1 + 625 0.67 0.846402
Target:  5'- --gUGCGGcaauuucaccguGUCGCAUCCcuguaaaaacaGCCACuGUCCa -3'
miRNA:   3'- cugACGCC------------UAGUGUAGG-----------UGGUG-UAGG- -5'
962 5' -52.5 NC_000902.1 + 50581 0.67 0.81925
Target:  5'- --gUGCuG-UCGCGUUCugCGCAUCCg -3'
miRNA:   3'- cugACGcCuAGUGUAGGugGUGUAGG- -5'
962 5' -52.5 NC_000902.1 + 44017 0.68 0.80401
Target:  5'- -cCUGUGGAuuuuuauccuugccuUCAUAUCCACUgacccgACAUCUg -3'
miRNA:   3'- cuGACGCCU---------------AGUGUAGGUGG------UGUAGG- -5'
962 5' -52.5 NC_000902.1 + 42683 0.68 0.800125
Target:  5'- cAUUGCGGAUCACcaGUCC--UACAUUCu -3'
miRNA:   3'- cUGACGCCUAGUG--UAGGugGUGUAGG- -5'
962 5' -52.5 NC_000902.1 + 53508 0.68 0.798171
Target:  5'- cGCUGacaccacCGGAUCACcauuuuuAUCCACgGCAUCa -3'
miRNA:   3'- cUGAC-------GCCUAGUG-------UAGGUGgUGUAGg -5'
962 5' -52.5 NC_000902.1 + 49416 0.69 0.738792
Target:  5'- -uCUGCGGccUgACGUCUGCCACGauaUCCg -3'
miRNA:   3'- cuGACGCCu-AgUGUAGGUGGUGU---AGG- -5'
962 5' -52.5 NC_000902.1 + 14846 0.69 0.728114
Target:  5'- gGACUGCGGuuccUCGCGUUCACgucggCGCAUUUc -3'
miRNA:   3'- -CUGACGCCu---AGUGUAGGUG-----GUGUAGG- -5'
962 5' -52.5 NC_000902.1 + 50441 0.7 0.640142
Target:  5'- -gUUGUGGuaaaACGaCCACCACGUCCg -3'
miRNA:   3'- cuGACGCCuag-UGUaGGUGGUGUAGG- -5'
962 5' -52.5 NC_000902.1 + 34035 0.73 0.508608
Target:  5'- cGCUGCuGAcucaUACGUCCGCCuGCAUCCa -3'
miRNA:   3'- cUGACGcCUa---GUGUAGGUGG-UGUAGG- -5'
962 5' -52.5 NC_000902.1 + 27293 0.73 0.508608
Target:  5'- -cCUGCGGAUCAacgCCACCuGC-UCCg -3'
miRNA:   3'- cuGACGCCUAGUguaGGUGG-UGuAGG- -5'
962 5' -52.5 NC_000902.1 + 49591 0.73 0.467099
Target:  5'- aGCUGCGGAugcgUCACccUCUguuGCCAUAUCCg -3'
miRNA:   3'- cUGACGCCU----AGUGu-AGG---UGGUGUAGG- -5'
962 5' -52.5 NC_000902.1 + 40095 1.13 0.001188
Target:  5'- gGACUGCGGAUCACAUCCACCACAUCCg -3'
miRNA:   3'- -CUGACGCCUAGUGUAGGUGGUGUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.