Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9620 | 3' | -54.9 | NC_002577.1 | + | 70584 | 1.11 | 0.003117 |
Target: 5'- gUCCCCGAAGGGCUUCAAGCCUUCUGGu -3' miRNA: 3'- -AGGGGCUUCCCGAAGUUCGGAAGACC- -5' |
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9620 | 3' | -54.9 | NC_002577.1 | + | 58197 | 0.7 | 0.779688 |
Target: 5'- cUCCCCGGAagaaauuGGGCggCc-GUCUUCUGGc -3' miRNA: 3'- -AGGGGCUU-------CCCGaaGuuCGGAAGACC- -5' |
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9620 | 3' | -54.9 | NC_002577.1 | + | 161110 | 0.69 | 0.825129 |
Target: 5'- cCCCCGggGGGC---GAGCCg---GGc -3' miRNA: 3'- aGGGGCuuCCCGaagUUCGGaagaCC- -5' |
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9620 | 3' | -54.9 | NC_002577.1 | + | 136228 | 0.69 | 0.825129 |
Target: 5'- cCCCCGggGGGC---GAGCCg---GGc -3' miRNA: 3'- aGGGGCuuCCCGaagUUCGGaagaCC- -5' |
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9620 | 3' | -54.9 | NC_002577.1 | + | 1798 | 0.66 | 0.934343 |
Target: 5'- cCCCCGAguAGGGUua-GGGCCUggcagGGg -3' miRNA: 3'- aGGGGCU--UCCCGaagUUCGGAaga--CC- -5' |
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9620 | 3' | -54.9 | NC_002577.1 | + | 131815 | 0.66 | 0.934343 |
Target: 5'- cCCCCGAguAGGGUua-GGGCCUggcagGGg -3' miRNA: 3'- aGGGGCU--UCCCGaagUUCGGAaga--CC- -5' |
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9620 | 3' | -54.9 | NC_002577.1 | + | 157208 | 0.66 | 0.939206 |
Target: 5'- cUCCCCGGcuggcGGGCcaccaacUCGAGCuCUUCUcgaGGg -3' miRNA: 3'- -AGGGGCUu----CCCGa------AGUUCG-GAAGA---CC- -5' |
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9620 | 3' | -54.9 | NC_002577.1 | + | 140130 | 0.66 | 0.939206 |
Target: 5'- cUCCCCGGcuggcGGGCcaccaacUCGAGCuCUUCUcgaGGg -3' miRNA: 3'- -AGGGGCUu----CCCGa------AGUUCG-GAAGA---CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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