Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9620 | 5' | -49.4 | NC_002577.1 | + | 40273 | 0.68 | 0.99219 |
Target: 5'- uGCaCCGGAAUGGCGAgucGGGUC---CUGCg -3' miRNA: 3'- -CG-GGUUUUACUGCU---UCCGGaaaGGCG- -5' |
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9620 | 5' | -49.4 | NC_002577.1 | + | 74699 | 0.68 | 0.99219 |
Target: 5'- -aUCAGugGGUGugGAuugcAGGCCUUUCCa- -3' miRNA: 3'- cgGGUU--UUACugCU----UCCGGAAAGGcg -5' |
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9620 | 5' | -49.4 | NC_002577.1 | + | 121557 | 0.68 | 0.99219 |
Target: 5'- gGCCCGGAGgaGGCGGcGGGCauCUUguaCCGCg -3' miRNA: 3'- -CGGGUUUUa-CUGCU-UCCG--GAAa--GGCG- -5' |
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9620 | 5' | -49.4 | NC_002577.1 | + | 60423 | 0.68 | 0.99219 |
Target: 5'- cCCCGuuuuAUGGCGucgccccgcccGAGGCCg--CCGCc -3' miRNA: 3'- cGGGUuu--UACUGC-----------UUCCGGaaaGGCG- -5' |
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9620 | 5' | -49.4 | NC_002577.1 | + | 136903 | 0.69 | 0.989746 |
Target: 5'- cCCUGAAgcGUGccGCGAcgccGGGCCUUUcCCGCc -3' miRNA: 3'- cGGGUUU--UAC--UGCU----UCCGGAAA-GGCG- -5' |
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9620 | 5' | -49.4 | NC_002577.1 | + | 137152 | 0.69 | 0.989746 |
Target: 5'- uUCCGGAAcGucCGAGGGCCggucgcgcUCCGCg -3' miRNA: 3'- cGGGUUUUaCu-GCUUCCGGaa------AGGCG- -5' |
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9620 | 5' | -49.4 | NC_002577.1 | + | 160435 | 0.69 | 0.989746 |
Target: 5'- cCCUGAAgcGUGccGCGAcgccGGGCCUUUcCCGCc -3' miRNA: 3'- cGGGUUU--UAC--UGCU----UCCGGAAA-GGCG- -5' |
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9620 | 5' | -49.4 | NC_002577.1 | + | 104690 | 0.69 | 0.989746 |
Target: 5'- cGCCUgc-GUGACGAuccgcGGCgUcgUCCGCg -3' miRNA: 3'- -CGGGuuuUACUGCUu----CCGgAa-AGGCG- -5' |
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9620 | 5' | -49.4 | NC_002577.1 | + | 21485 | 0.69 | 0.989746 |
Target: 5'- aUCCAAAcUGACGAAGGUauaagCCGg -3' miRNA: 3'- cGGGUUUuACUGCUUCCGgaaa-GGCg -5' |
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9620 | 5' | -49.4 | NC_002577.1 | + | 160186 | 0.69 | 0.989746 |
Target: 5'- uUCCGGAAcGucCGAGGGCCggucgcgcUCCGCg -3' miRNA: 3'- cGGGUUUUaCu-GCUUCCGGaa------AGGCG- -5' |
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9620 | 5' | -49.4 | NC_002577.1 | + | 103021 | 0.69 | 0.988318 |
Target: 5'- uCCCAAAA----GucGGCCUUUCCGUa -3' miRNA: 3'- cGGGUUUUacugCuuCCGGAAAGGCG- -5' |
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9620 | 5' | -49.4 | NC_002577.1 | + | 64292 | 0.69 | 0.985719 |
Target: 5'- aGCCCGGGcgGuuuuaucugaggaguGCGGAGcGCCUcaugCCGCc -3' miRNA: 3'- -CGGGUUUuaC---------------UGCUUC-CGGAaa--GGCG- -5' |
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9620 | 5' | -49.4 | NC_002577.1 | + | 153178 | 0.69 | 0.983101 |
Target: 5'- uGCCCGAGAgaACGAgaucAGGCUacaCCGCu -3' miRNA: 3'- -CGGGUUUUacUGCU----UCCGGaaaGGCG- -5' |
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9620 | 5' | -49.4 | NC_002577.1 | + | 62822 | 0.7 | 0.981874 |
Target: 5'- cGCCCAGAGUuuCGAuuagauaucgauccaGGGCCaacauaaaguUUUCUGCg -3' miRNA: 3'- -CGGGUUUUAcuGCU---------------UCCGG----------AAAGGCG- -5' |
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9620 | 5' | -49.4 | NC_002577.1 | + | 136969 | 0.7 | 0.981019 |
Target: 5'- gGCCCucg--GACGuuccggaaGAGGCCgcgucggcgUCCGCg -3' miRNA: 3'- -CGGGuuuuaCUGC--------UUCCGGaa-------AGGCG- -5' |
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9620 | 5' | -49.4 | NC_002577.1 | + | 17582 | 0.7 | 0.981019 |
Target: 5'- cGCCCAguggcgcgaAAcgGGCGGAGGuCCgaUCgGCc -3' miRNA: 3'- -CGGGU---------UUuaCUGCUUCC-GGaaAGgCG- -5' |
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9620 | 5' | -49.4 | NC_002577.1 | + | 160368 | 0.7 | 0.981019 |
Target: 5'- gGCCCucg--GACGuuccggaaGAGGCCgcgucggcgUCCGCg -3' miRNA: 3'- -CGGGuuuuaCUGC--------UUCCGGaa-------AGGCG- -5' |
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9620 | 5' | -49.4 | NC_002577.1 | + | 27016 | 0.7 | 0.976291 |
Target: 5'- gGCCUuucuGAUGGCcgaGggGGCCg--CCGUa -3' miRNA: 3'- -CGGGuu--UUACUG---CuuCCGGaaaGGCG- -5' |
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9620 | 5' | -49.4 | NC_002577.1 | + | 155201 | 0.7 | 0.973348 |
Target: 5'- cGCCCGAgccuaagcgucucGAUGcuCaAGGGCCggUCCGCu -3' miRNA: 3'- -CGGGUU-------------UUACu-GcUUCCGGaaAGGCG- -5' |
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9620 | 5' | -49.4 | NC_002577.1 | + | 142137 | 0.7 | 0.973348 |
Target: 5'- cGCCCGAgccuaagcgucucGAUGcuCaAGGGCCggUCCGCu -3' miRNA: 3'- -CGGGUU-------------UUACu-GcUUCCGGaaAGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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