miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9621 3' -50.8 NC_002577.1 + 8176 0.69 0.954373
Target:  5'- cGGACaccggugcguccggGCGCUCGGC-CgGGcGAACGGCg -3'
miRNA:   3'- -UCUG--------------UGCGAGCCGuGaCUaUUUGCUG- -5'
9621 3' -50.8 NC_002577.1 + 125437 0.69 0.954373
Target:  5'- cGGACaccggugcguccggGCGCUCGGC-CgGGcGAACGGCg -3'
miRNA:   3'- -UCUG--------------UGCGAGCCGuGaCUaUUUGCUG- -5'
9621 3' -50.8 NC_002577.1 + 12110 0.7 0.942523
Target:  5'- --uCGCGCUCGGCGCgccgGAGCaGGCg -3'
miRNA:   3'- ucuGUGCGAGCCGUGacuaUUUG-CUG- -5'
9621 3' -50.8 NC_002577.1 + 45008 0.7 0.93767
Target:  5'- cGGCACGUUCGcGCGCUGcgGu-CGAUu -3'
miRNA:   3'- uCUGUGCGAGC-CGUGACuaUuuGCUG- -5'
9621 3' -50.8 NC_002577.1 + 75857 0.7 0.932562
Target:  5'- gGGACGCGCUCGauucguccGUGCUGG--AGCGAUc -3'
miRNA:   3'- -UCUGUGCGAGC--------CGUGACUauUUGCUG- -5'
9621 3' -50.8 NC_002577.1 + 121587 0.74 0.780447
Target:  5'- -cGCGCGCUCGGCGCgccgGAGCaGGCg -3'
miRNA:   3'- ucUGUGCGAGCCGUGacuaUUUG-CUG- -5'
9621 3' -50.8 NC_002577.1 + 74294 1.11 0.006937
Target:  5'- cAGACACGCUCGGCACUGAUAAACGACg -3'
miRNA:   3'- -UCUGUGCGAGCCGUGACUAUUUGCUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.