Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9621 | 5' | -58.2 | NC_002577.1 | + | 155777 | 0.66 | 0.84331 |
Target: 5'- -aGCCAcgGCUCCGGCAgugcCGGCC-UGg-- -3' miRNA: 3'- gaCGGU--CGAGGCCGU----GCUGGuACagc -5' |
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9621 | 5' | -58.2 | NC_002577.1 | + | 141561 | 0.66 | 0.84331 |
Target: 5'- -aGCCAcgGCUCCGGCAgugcCGGCC-UGg-- -3' miRNA: 3'- gaCGGU--CGAGGCCGU----GCUGGuACagc -5' |
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9621 | 5' | -58.2 | NC_002577.1 | + | 77281 | 0.66 | 0.85114 |
Target: 5'- cCUGUCGGU--CGaGCACGGCgAUGUCa -3' miRNA: 3'- -GACGGUCGagGC-CGUGCUGgUACAGc -5' |
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9621 | 5' | -58.2 | NC_002577.1 | + | 134312 | 0.67 | 0.792709 |
Target: 5'- -cGCCggcGGCUCC-GCGCGGCCAguagGcCGa -3' miRNA: 3'- gaCGG---UCGAGGcCGUGCUGGUa---CaGC- -5' |
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9621 | 5' | -58.2 | NC_002577.1 | + | 163016 | 0.67 | 0.792709 |
Target: 5'- -cGCCggcGGCUCC-GCGCGGCCAguagGcCGa -3' miRNA: 3'- gaCGG---UCGAGGcCGUGCUGGUa---CaGC- -5' |
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9621 | 5' | -58.2 | NC_002577.1 | + | 141531 | 0.68 | 0.717785 |
Target: 5'- gCUGCCGGCgucgccaCGGUugGACCGgcgCGc -3' miRNA: 3'- -GACGGUCGag-----GCCGugCUGGUacaGC- -5' |
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9621 | 5' | -58.2 | NC_002577.1 | + | 155806 | 0.68 | 0.717785 |
Target: 5'- gCUGCCGGCgucgccaCGGUugGACCGgcgCGc -3' miRNA: 3'- -GACGGUCGag-----GCCGugCUGGUacaGC- -5' |
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9621 | 5' | -58.2 | NC_002577.1 | + | 10299 | 0.69 | 0.658386 |
Target: 5'- -gGCCGGCU-CGGCGCGAgCCGgccUCGg -3' miRNA: 3'- gaCGGUCGAgGCCGUGCU-GGUac-AGC- -5' |
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9621 | 5' | -58.2 | NC_002577.1 | + | 123315 | 0.69 | 0.658386 |
Target: 5'- -gGCCGGCU-CGGCGCGAgCCGgccUCGg -3' miRNA: 3'- gaCGGUCGAgGCCGUGCU-GGUac-AGC- -5' |
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9621 | 5' | -58.2 | NC_002577.1 | + | 121776 | 0.7 | 0.59824 |
Target: 5'- -cGCCuGCUCCGGCGCG-CCGaG-CGc -3' miRNA: 3'- gaCGGuCGAGGCCGUGCuGGUaCaGC- -5' |
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9621 | 5' | -58.2 | NC_002577.1 | + | 5053 | 0.7 | 0.59824 |
Target: 5'- -gGCCgAGCaUCGGCGCGcgcGCCGUGUCc -3' miRNA: 3'- gaCGG-UCGaGGCCGUGC---UGGUACAGc -5' |
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9621 | 5' | -58.2 | NC_002577.1 | + | 128561 | 0.7 | 0.59824 |
Target: 5'- -gGCCgAGCaUCGGCGCGcgcGCCGUGUCc -3' miRNA: 3'- gaCGG-UCGaGGCCGUGC---UGGUACAGc -5' |
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9621 | 5' | -58.2 | NC_002577.1 | + | 158410 | 0.71 | 0.572354 |
Target: 5'- -cGUCAGCcgUCCGGCGCGAgggacgacggagcgcCCAUGUUu -3' miRNA: 3'- gaCGGUCG--AGGCCGUGCU---------------GGUACAGc -5' |
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9621 | 5' | -58.2 | NC_002577.1 | + | 11922 | 0.71 | 0.548701 |
Target: 5'- -cGCCuGCUCCGGCGCG-CCGaGcgCGa -3' miRNA: 3'- gaCGGuCGAGGCCGUGCuGGUaCa-GC- -5' |
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9621 | 5' | -58.2 | NC_002577.1 | + | 138928 | 0.71 | 0.572354 |
Target: 5'- -cGUCAGCcgUCCGGCGCGAgggacgacggagcgcCCAUGUUu -3' miRNA: 3'- gaCGGUCG--AGGCCGUGCU---------------GGUACAGc -5' |
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9621 | 5' | -58.2 | NC_002577.1 | + | 60971 | 0.72 | 0.491095 |
Target: 5'- uCUGCCcaccGGCggUCGGUACGACCGUGgucCGg -3' miRNA: 3'- -GACGG----UCGa-GGCCGUGCUGGUACa--GC- -5' |
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9621 | 5' | -58.2 | NC_002577.1 | + | 74256 | 1.1 | 0.001764 |
Target: 5'- aCUGCCAGCUCCGGCACGACCAUGUCGg -3' miRNA: 3'- -GACGGUCGAGGCCGUGCUGGUACAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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