miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9622 3' -56.9 NC_002577.1 + 162374 0.74 0.4359
Target:  5'- gGAGGAGC-GGCGGCGaaagCGGG-GUCCu -3'
miRNA:   3'- -UUUUUCGuCCGCCGCca--GCCCuCAGG- -5'
9622 3' -56.9 NC_002577.1 + 124440 0.67 0.847615
Target:  5'- ---uGGCGauGGCgcgGGCGG--GGGAGUCCg -3'
miRNA:   3'- uuuuUCGU--CCG---CCGCCagCCCUCAGG- -5'
9622 3' -56.9 NC_002577.1 + 130565 0.67 0.822981
Target:  5'- cGAGGGUAGGCGcagaggaaaucGCGGUCGcuguGGAcUCCg -3'
miRNA:   3'- uUUUUCGUCCGC-----------CGCCAGC----CCUcAGG- -5'
9622 3' -56.9 NC_002577.1 + 121770 0.67 0.814416
Target:  5'- gGAGGGGCGcGCGgaucaGCGGUCGGGucgcgaucgcGUCCg -3'
miRNA:   3'- -UUUUUCGUcCGC-----CGCCAGCCCu---------CAGG- -5'
9622 3' -56.9 NC_002577.1 + 125672 0.69 0.750352
Target:  5'- --uAAGUAccGGCguuccgGGCGGUCGGcGAGUCg -3'
miRNA:   3'- uuuUUCGU--CCG------CCGCCAGCC-CUCAGg -5'
9622 3' -56.9 NC_002577.1 + 134135 0.7 0.661022
Target:  5'- -cGGAGCcGcCGGCGGUCGGcGGUCUa -3'
miRNA:   3'- uuUUUCGuCcGCCGCCAGCCcUCAGG- -5'
9622 3' -56.9 NC_002577.1 + 126956 0.66 0.877729
Target:  5'- cGAGAGGCGuGGgGGgGGg-GGGAGgCCu -3'
miRNA:   3'- -UUUUUCGU-CCgCCgCCagCCCUCaGG- -5'
9622 3' -56.9 NC_002577.1 + 133402 0.66 0.877017
Target:  5'- ----cGCGGGCugagugcaccuguGGCGG-CGGGAGgCUg -3'
miRNA:   3'- uuuuuCGUCCG-------------CCGCCaGCCCUCaGG- -5'
9622 3' -56.9 NC_002577.1 + 162932 0.66 0.855449
Target:  5'- ----uGCcGGCGGCGG-CaGGGGGUUUc -3'
miRNA:   3'- uuuuuCGuCCGCCGCCaG-CCCUCAGG- -5'
9622 3' -56.9 NC_002577.1 + 131054 0.67 0.838775
Target:  5'- uAGGGGCAGGggaGGCguuuaggGGUCGGGucgGGUUCg -3'
miRNA:   3'- uUUUUCGUCCg--CCG-------CCAGCCC---UCAGG- -5'
9622 3' -56.9 NC_002577.1 + 7956 0.68 0.805688
Target:  5'- cGGAgcGCGGGC-GCGGgcaGGGAGUUa -3'
miRNA:   3'- -UUUuuCGUCCGcCGCCag-CCCUCAGg -5'
9622 3' -56.9 NC_002577.1 + 139022 0.73 0.472456
Target:  5'- gAGGGAGCGcGGUGGCGGgCGGGGGg-- -3'
miRNA:   3'- -UUUUUCGU-CCGCCGCCaGCCCUCagg -5'
9622 3' -56.9 NC_002577.1 + 142074 0.66 0.870512
Target:  5'- gGAGGGGguGGUGGUGGUUGGaGAc--- -3'
miRNA:   3'- -UUUUUCguCCGCCGCCAGCC-CUcagg -5'
9622 3' -56.9 NC_002577.1 + 136155 0.72 0.569738
Target:  5'- ---cGGUAGGCagaGGCGGUUGGcGAGUgCg -3'
miRNA:   3'- uuuuUCGUCCG---CCGCCAGCC-CUCAgG- -5'
9622 3' -56.9 NC_002577.1 + 135442 0.67 0.831374
Target:  5'- ---uGGCuGGGCGuGCGGaUCGGGGGg-- -3'
miRNA:   3'- uuuuUCG-UCCGC-CGCC-AGCCCUCagg -5'
9622 3' -56.9 NC_002577.1 + 142115 0.66 0.870512
Target:  5'- gGAGGGGguGGUGGUGGUUGGaGAc--- -3'
miRNA:   3'- -UUUUUCguCCGCCGCCAGCC-CUcagg -5'
9622 3' -56.9 NC_002577.1 + 120840 0.71 0.620341
Target:  5'- cGAAGAGCuagucucauaAGGCGGCGGa-GGaGAGUCg -3'
miRNA:   3'- -UUUUUCG----------UCCGCCGCCagCC-CUCAGg -5'
9622 3' -56.9 NC_002577.1 + 142196 0.67 0.847615
Target:  5'- -uGGAGgGGGUGGUGGU-GGGAGa-- -3'
miRNA:   3'- uuUUUCgUCCGCCGCCAgCCCUCagg -5'
9622 3' -56.9 NC_002577.1 + 7942 0.69 0.750352
Target:  5'- --uAAGUAccGGCguuccgGGCGGUCGGcGAGUCg -3'
miRNA:   3'- uuuUUCGU--CCG------CCGCCAGCC-CUCAGg -5'
9622 3' -56.9 NC_002577.1 + 64133 0.68 0.804806
Target:  5'- --cAAGCAGGUagagggaugcgagGGCGGUUGGaGuGUCg -3'
miRNA:   3'- uuuUUCGUCCG-------------CCGCCAGCC-CuCAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.