miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9623 3' -49.6 NC_002577.1 + 42155 0.66 0.997163
Target:  5'- cGACGUUGCUU--ACUUUGGgaGCGUcuGACg -3'
miRNA:   3'- -CUGCGACGAAgcUGAAAUC--UGCA--CUG- -5'
9623 3' -49.6 NC_002577.1 + 62264 0.66 0.996644
Target:  5'- aGACGC-GCUgaaGACUacuUUAGAacaaGUGACu -3'
miRNA:   3'- -CUGCGaCGAag-CUGA---AAUCUg---CACUG- -5'
9623 3' -49.6 NC_002577.1 + 135887 0.67 0.995369
Target:  5'- gGACGgaGCaUUGGCUgcgGGGCGaGACg -3'
miRNA:   3'- -CUGCgaCGaAGCUGAaa-UCUGCaCUG- -5'
9623 3' -49.6 NC_002577.1 + 48906 0.67 0.995369
Target:  5'- -cCGCgGCUUUGG---UAGACGUGAUa -3'
miRNA:   3'- cuGCGaCGAAGCUgaaAUCUGCACUG- -5'
9623 3' -49.6 NC_002577.1 + 161450 0.67 0.995369
Target:  5'- gGACGgaGCaUUGGCUgcgGGGCGaGACg -3'
miRNA:   3'- -CUGCgaCGaAGCUGAaa-UCUGCaCUG- -5'
9623 3' -49.6 NC_002577.1 + 102516 0.67 0.994597
Target:  5'- aGAC-CUGCgaucCGACU--AGACGUGAa -3'
miRNA:   3'- -CUGcGACGaa--GCUGAaaUCUGCACUg -5'
9623 3' -49.6 NC_002577.1 + 68217 0.68 0.991642
Target:  5'- uGACGgccgaCUGUUUCGAag-UGGACGUGGu -3'
miRNA:   3'- -CUGC-----GACGAAGCUgaaAUCUGCACUg -5'
9623 3' -49.6 NC_002577.1 + 101127 0.69 0.97982
Target:  5'- cGAUGCuUGCgcaCGGCUUUuGGGCGUGGa -3'
miRNA:   3'- -CUGCG-ACGaa-GCUGAAA-UCUGCACUg -5'
9623 3' -49.6 NC_002577.1 + 55621 0.69 0.974839
Target:  5'- aGACGUUGCUgagagCcACUUUGGAcacaauCGUGGCa -3'
miRNA:   3'- -CUGCGACGAa----GcUGAAAUCU------GCACUG- -5'
9623 3' -49.6 NC_002577.1 + 81276 0.71 0.941236
Target:  5'- cGACGCUGaggUGGCcgcGGGCGUGGCg -3'
miRNA:   3'- -CUGCGACgaaGCUGaaaUCUGCACUG- -5'
9623 3' -49.6 NC_002577.1 + 78096 1.09 0.011878
Target:  5'- gGACGCUGCUUCGACUUUAGACGUGACc -3'
miRNA:   3'- -CUGCGACGAAGCUGAAAUCUGCACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.