miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9623 5' -49.3 NC_002577.1 + 112436 0.66 0.998665
Target:  5'- cUGcgACgGUCCCGCCGuCGAAAgUGc -3'
miRNA:   3'- cACaaUG-CAGGGCGGCuGUUUUgAUa -5'
9623 5' -49.3 NC_002577.1 + 37737 0.66 0.998385
Target:  5'- ----cGCGUCCCGuuGACuaAGAACa-- -3'
miRNA:   3'- cacaaUGCAGGGCggCUG--UUUUGaua -5'
9623 5' -49.3 NC_002577.1 + 66371 0.66 0.998385
Target:  5'- cUGUcUGCGUauauggCCCGCgUGGCAGGACUGg -3'
miRNA:   3'- cACA-AUGCA------GGGCG-GCUGUUUUGAUa -5'
9623 5' -49.3 NC_002577.1 + 18345 0.66 0.998057
Target:  5'- -----cCGUCCCGauucgCGACGAGACUGa -3'
miRNA:   3'- cacaauGCAGGGCg----GCUGUUUUGAUa -5'
9623 5' -49.3 NC_002577.1 + 107771 0.67 0.995459
Target:  5'- cGUGUUGCGUCUCcacaCUGAUcAAGCUGUu -3'
miRNA:   3'- -CACAAUGCAGGGc---GGCUGuUUUGAUA- -5'
9623 5' -49.3 NC_002577.1 + 109855 0.67 0.995459
Target:  5'- -cGUU-CGUCCCguGCCGACAGAcaUGUa -3'
miRNA:   3'- caCAAuGCAGGG--CGGCUGUUUugAUA- -5'
9623 5' -49.3 NC_002577.1 + 89163 0.68 0.992859
Target:  5'- cGUGg---GUCCCGuCCGGCAGGuguGCUGUa -3'
miRNA:   3'- -CACaaugCAGGGC-GGCUGUUU---UGAUA- -5'
9623 5' -49.3 NC_002577.1 + 49862 0.69 0.979765
Target:  5'- ----cGCGUCUCGCCGcugugcuACAAAGCUAc -3'
miRNA:   3'- cacaaUGCAGGGCGGC-------UGUUUUGAUa -5'
9623 5' -49.3 NC_002577.1 + 158393 0.72 0.925608
Target:  5'- cGUGggGCGUCCCGCCGGg-------- -3'
miRNA:   3'- -CACaaUGCAGGGCGGCUguuuugaua -5'
9623 5' -49.3 NC_002577.1 + 138944 0.72 0.925608
Target:  5'- cGUGggGCGUCCCGCCGGg-------- -3'
miRNA:   3'- -CACaaUGCAGGGCGGCUguuuugaua -5'
9623 5' -49.3 NC_002577.1 + 78060 1.06 0.01955
Target:  5'- cGUGUUACGUCCCGCCGACAAAACUAUc -3'
miRNA:   3'- -CACAAUGCAGGGCGGCUGUUUUGAUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.