Results 21 - 40 of 59 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9624 | 3' | -50.2 | NC_002577.1 | + | 7758 | 0.67 | 0.991214 |
Target: 5'- cCGcCCGGAACgccGGUA-CUUACGCGCu -3' miRNA: 3'- -GC-GGUCUUGacuUUAUcGAGUGCGCG- -5' |
|||||||
9624 | 3' | -50.2 | NC_002577.1 | + | 128314 | 0.67 | 0.991214 |
Target: 5'- -aCCGGGACgGAcagGGCgaCGCGCGCg -3' miRNA: 3'- gcGGUCUUGaCUuuaUCGa-GUGCGCG- -5' |
|||||||
9624 | 3' | -50.2 | NC_002577.1 | + | 125856 | 0.67 | 0.991214 |
Target: 5'- cCGcCCGGAACgccGGUA-CUUACGCGCu -3' miRNA: 3'- -GC-GGUCUUGacuUUAUcGAGUGCGCG- -5' |
|||||||
9624 | 3' | -50.2 | NC_002577.1 | + | 102031 | 0.67 | 0.989947 |
Target: 5'- gGCCcgAGGGCcGAAGacguUAGggCACGCGCg -3' miRNA: 3'- gCGG--UCUUGaCUUU----AUCgaGUGCGCG- -5' |
|||||||
9624 | 3' | -50.2 | NC_002577.1 | + | 123017 | 0.68 | 0.988542 |
Target: 5'- gGCguGAGCUcGGGAUgAGuCUCggACGCGCg -3' miRNA: 3'- gCGguCUUGA-CUUUA-UC-GAG--UGCGCG- -5' |
|||||||
9624 | 3' | -50.2 | NC_002577.1 | + | 12099 | 0.68 | 0.986989 |
Target: 5'- gCGCCGGAGCa-----GGCgCGCGUGCg -3' miRNA: 3'- -GCGGUCUUGacuuuaUCGaGUGCGCG- -5' |
|||||||
9624 | 3' | -50.2 | NC_002577.1 | + | 81278 | 0.68 | 0.986989 |
Target: 5'- -uCCGacGCUGAGGUGGC-CGCGgGCg -3' miRNA: 3'- gcGGUcuUGACUUUAUCGaGUGCgCG- -5' |
|||||||
9624 | 3' | -50.2 | NC_002577.1 | + | 121599 | 0.68 | 0.986989 |
Target: 5'- gCGCCGGAGCa-----GGCgCGCGUGCg -3' miRNA: 3'- -GCGGUCUUGacuuuaUCGaGUGCGCG- -5' |
|||||||
9624 | 3' | -50.2 | NC_002577.1 | + | 43941 | 0.68 | 0.986825 |
Target: 5'- gCGCCcaaaaacuguGGAACgGGAggAGCUCugccgagcagcguACGCGCg -3' miRNA: 3'- -GCGG----------UCUUGaCUUuaUCGAG-------------UGCGCG- -5' |
|||||||
9624 | 3' | -50.2 | NC_002577.1 | + | 80922 | 0.68 | 0.983403 |
Target: 5'- gCGCguGAGCUauuucAGUUCugGCGCu -3' miRNA: 3'- -GCGguCUUGAcuuuaUCGAGugCGCG- -5' |
|||||||
9624 | 3' | -50.2 | NC_002577.1 | + | 38575 | 0.68 | 0.983403 |
Target: 5'- gGCCAGAAacGAGAU-GCUCGCggaccuaagaGCGCc -3' miRNA: 3'- gCGGUCUUgaCUUUAuCGAGUG----------CGCG- -5' |
|||||||
9624 | 3' | -50.2 | NC_002577.1 | + | 128922 | 0.68 | 0.981351 |
Target: 5'- aCGCCGauGGACgGAGAUGGC--GCGCGg -3' miRNA: 3'- -GCGGU--CUUGaCUUUAUCGagUGCGCg -5' |
|||||||
9624 | 3' | -50.2 | NC_002577.1 | + | 4691 | 0.68 | 0.981351 |
Target: 5'- aCGCCGauGGACgGAGAUGGC--GCGCGg -3' miRNA: 3'- -GCGGU--CUUGaCUUUAUCGagUGCGCg -5' |
|||||||
9624 | 3' | -50.2 | NC_002577.1 | + | 59157 | 0.68 | 0.981351 |
Target: 5'- uGUCGGGguauuggacuauGCcGAGGUGGCUCGC-CGCa -3' miRNA: 3'- gCGGUCU------------UGaCUUUAUCGAGUGcGCG- -5' |
|||||||
9624 | 3' | -50.2 | NC_002577.1 | + | 87525 | 0.69 | 0.979114 |
Target: 5'- uGCCAGcGCauug--GGCUCGCGCGa -3' miRNA: 3'- gCGGUCuUGacuuuaUCGAGUGCGCg -5' |
|||||||
9624 | 3' | -50.2 | NC_002577.1 | + | 3641 | 0.69 | 0.976685 |
Target: 5'- uGCCGGcgGACUgcaggcgaaGAAGUAGC-CGgGCGCg -3' miRNA: 3'- gCGGUC--UUGA---------CUUUAUCGaGUgCGCG- -5' |
|||||||
9624 | 3' | -50.2 | NC_002577.1 | + | 33351 | 0.69 | 0.976685 |
Target: 5'- aCGCCAGAACcGGGAU-GCUCGgaGCa- -3' miRNA: 3'- -GCGGUCUUGaCUUUAuCGAGUg-CGcg -5' |
|||||||
9624 | 3' | -50.2 | NC_002577.1 | + | 38358 | 0.69 | 0.976685 |
Target: 5'- uGCCGGcGCcGAGuucaauUGGcCUCugGCGCg -3' miRNA: 3'- gCGGUCuUGaCUUu-----AUC-GAGugCGCG- -5' |
|||||||
9624 | 3' | -50.2 | NC_002577.1 | + | 129972 | 0.69 | 0.976685 |
Target: 5'- uGCCGGcgGACUgcaggcgaaGAAGUAGC-CGgGCGCg -3' miRNA: 3'- gCGGUC--UUGA---------CUUUAUCGaGUgCGCG- -5' |
|||||||
9624 | 3' | -50.2 | NC_002577.1 | + | 13496 | 0.69 | 0.976431 |
Target: 5'- gGUCAgGAACUGGGAUAuauuuacGCUC-CGUGCc -3' miRNA: 3'- gCGGU-CUUGACUUUAU-------CGAGuGCGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home