Results 21 - 40 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9624 | 5' | -53.9 | NC_002577.1 | + | 134096 | 0.67 | 0.927926 |
Target: 5'- cGGCGggGAUGCAGCg--UGCGGCUCg -3' miRNA: 3'- uCUGCggUUAUGUCGguaGCGUCGAG- -5' |
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9624 | 5' | -53.9 | NC_002577.1 | + | 155794 | 0.67 | 0.922395 |
Target: 5'- cGGAuCGCCAGUGCuGCCGgcgUCGCcacGGUUg -3' miRNA: 3'- -UCU-GCGGUUAUGuCGGU---AGCG---UCGAg -5' |
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9624 | 5' | -53.9 | NC_002577.1 | + | 4438 | 0.67 | 0.922395 |
Target: 5'- cGGCGCgCGuacccGCGGCCAUCccuGCAGCg- -3' miRNA: 3'- uCUGCG-GUua---UGUCGGUAG---CGUCGag -5' |
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9624 | 5' | -53.9 | NC_002577.1 | + | 129176 | 0.67 | 0.922395 |
Target: 5'- cGGCGCgCGuacccGCGGCCAUCccuGCAGCg- -3' miRNA: 3'- uCUGCG-GUua---UGUCGGUAG---CGUCGag -5' |
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9624 | 5' | -53.9 | NC_002577.1 | + | 141543 | 0.67 | 0.922395 |
Target: 5'- cGGAuCGCCAGUGCuGCCGgcgUCGCcacGGUUg -3' miRNA: 3'- -UCU-GCGGUUAUGuCGGU---AGCG---UCGAg -5' |
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9624 | 5' | -53.9 | NC_002577.1 | + | 160321 | 0.67 | 0.922395 |
Target: 5'- -cGCGCCAcgcguUGCAGCCGUCG-GGCc- -3' miRNA: 3'- ucUGCGGUu----AUGUCGGUAGCgUCGag -5' |
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9624 | 5' | -53.9 | NC_002577.1 | + | 137016 | 0.67 | 0.922395 |
Target: 5'- -cGCGCCAcgcguUGCAGCCGUCG-GGCc- -3' miRNA: 3'- ucUGCGGUu----AUGUCGGUAGCgUCGag -5' |
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9624 | 5' | -53.9 | NC_002577.1 | + | 21542 | 0.68 | 0.897775 |
Target: 5'- aAGAUGCCAcacaGGCCAaaugugaaauUCGCAGC-Ca -3' miRNA: 3'- -UCUGCGGUuaugUCGGU----------AGCGUCGaG- -5' |
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9624 | 5' | -53.9 | NC_002577.1 | + | 54682 | 0.68 | 0.897775 |
Target: 5'- aAGGCGCgaaaCAGUGCcGCgAUUGCAGCg- -3' miRNA: 3'- -UCUGCG----GUUAUGuCGgUAGCGUCGag -5' |
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9624 | 5' | -53.9 | NC_002577.1 | + | 137382 | 0.68 | 0.891006 |
Target: 5'- gGGGCGCCAGg--AGCgAacucUCGCGGCUa -3' miRNA: 3'- -UCUGCGGUUaugUCGgU----AGCGUCGAg -5' |
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9624 | 5' | -53.9 | NC_002577.1 | + | 152907 | 0.68 | 0.88471 |
Target: 5'- aAGAC-CCGGaGCGGCCAUCGagaaagaaucagguaGGCUCc -3' miRNA: 3'- -UCUGcGGUUaUGUCGGUAGCg--------------UCGAG- -5' |
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9624 | 5' | -53.9 | NC_002577.1 | + | 103903 | 0.68 | 0.883998 |
Target: 5'- uGGCuGCUAGUAUcGCCG-CGCAGUUCc -3' miRNA: 3'- uCUG-CGGUUAUGuCGGUaGCGUCGAG- -5' |
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9624 | 5' | -53.9 | NC_002577.1 | + | 55019 | 0.68 | 0.876756 |
Target: 5'- cGGCGUCGGcaaguuCAGCCGcagaaGCAGCUCg -3' miRNA: 3'- uCUGCGGUUau----GUCGGUag---CGUCGAG- -5' |
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9624 | 5' | -53.9 | NC_002577.1 | + | 136244 | 0.68 | 0.876756 |
Target: 5'- cGGGCGCCGGUAC-GCaaaacaGguGCUCg -3' miRNA: 3'- -UCUGCGGUUAUGuCGguag--CguCGAG- -5' |
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9624 | 5' | -53.9 | NC_002577.1 | + | 76971 | 0.68 | 0.876756 |
Target: 5'- gAGGCGCCAu--CGGaagCAUCGguGCUa -3' miRNA: 3'- -UCUGCGGUuauGUCg--GUAGCguCGAg -5' |
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9624 | 5' | -53.9 | NC_002577.1 | + | 54849 | 0.68 | 0.876756 |
Target: 5'- cGACGCC---GCAGCCGaUGaGGCUCa -3' miRNA: 3'- uCUGCGGuuaUGUCGGUaGCgUCGAG- -5' |
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9624 | 5' | -53.9 | NC_002577.1 | + | 161094 | 0.68 | 0.876756 |
Target: 5'- cGGGCGCCGGUAC-GCaaaacaGguGCUCg -3' miRNA: 3'- -UCUGCGGUUAUGuCGguag--CguCGAG- -5' |
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9624 | 5' | -53.9 | NC_002577.1 | + | 9340 | 0.68 | 0.874538 |
Target: 5'- gGGGCGCgGAcgcggucugagggcUugAGCCGguggcUGCAGCUCg -3' miRNA: 3'- -UCUGCGgUU--------------AugUCGGUa----GCGUCGAG- -5' |
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9624 | 5' | -53.9 | NC_002577.1 | + | 124274 | 0.68 | 0.874538 |
Target: 5'- gGGGCGCgGAcgcggucugagggcUugAGCCGguggcUGCAGCUCg -3' miRNA: 3'- -UCUGCGgUU--------------AugUCGGUa----GCGUCGAG- -5' |
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9624 | 5' | -53.9 | NC_002577.1 | + | 23369 | 0.69 | 0.869284 |
Target: 5'- -aGCGCUcuAUGCAGgCGUCGCGGC-Cg -3' miRNA: 3'- ucUGCGGu-UAUGUCgGUAGCGUCGaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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