miRNA: 3'- gaUACGGUcua-ACCGaGCGGACGUCU- -5'
miRNA: 3'- gaUACGGUCUA--------------ACCGaGCGG-ACGUCU- -5'
miRNA: 3'- -GAUACGG-UCUaACCGAGCGGaCGUcu -5'
miRNA: 3'- -GAUACGGUCUAACCGAGCGGACGUCU- -5'
Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 9625 | 3' | -54.2 | NC_002577.1 | + | 50161 | 0.66 | 0.953807 |
|
Target: 5'- -cAUGUCGaacgUGGC-CGCUUGCGGAa -3' miRNA: 3'- gaUACGGUcua-ACCGaGCGGACGUCU- -5' |
|||||||
| 9625 | 3' | -54.2 | NC_002577.1 | + | 27958 | 0.69 | 0.839076 |
|
Target: 5'- -aGUGCCGGAUcugugacgggaguuUGGC-CGUCuUGCAGGc -3' miRNA: 3'- gaUACGGUCUA--------------ACCGaGCGG-ACGUCU- -5' |
|||||||
| 9625 | 3' | -54.2 | NC_002577.1 | + | 59143 | 0.75 | 0.533573 |
|
Target: 5'- aCUAUGCCgAGG-UGGCUCGCC-GCAa- -3' miRNA: 3'- -GAUACGG-UCUaACCGAGCGGaCGUcu -5' |
|||||||
| 9625 | 3' | -54.2 | NC_002577.1 | + | 85743 | 1.1 | 0.003322 |
|
Target: 5'- aCUAUGCCAGAUUGGCUCGCCUGCAGAa -3' miRNA: 3'- -GAUACGGUCUAACCGAGCGGACGUCU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home