miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9626 3' -52.4 NC_002577.1 + 88498 0.66 0.98277
Target:  5'- --gGCCGGCcuaUACGGgAUCUcgauGCGUCAu -3'
miRNA:   3'- cugUGGCUG---AUGCCgUAGA----UGCAGUu -5'
9626 3' -52.4 NC_002577.1 + 16301 0.66 0.975935
Target:  5'- aGugGCCGGCcuaACGGCAugggUCUAUGUaCAu -3'
miRNA:   3'- -CugUGGCUGa--UGCCGU----AGAUGCA-GUu -5'
9626 3' -52.4 NC_002577.1 + 102355 0.67 0.95667
Target:  5'- gGGCgaACCGGC-ACGGCAUCcaucGCGUCu- -3'
miRNA:   3'- -CUG--UGGCUGaUGCCGUAGa---UGCAGuu -5'
9626 3' -52.4 NC_002577.1 + 55029 0.67 0.95667
Target:  5'- -uCAUCGGCUGCGGCGUCgGCaaguUCAGc -3'
miRNA:   3'- cuGUGGCUGAUGCCGUAGaUGc---AGUU- -5'
9626 3' -52.4 NC_002577.1 + 25265 0.68 0.952657
Target:  5'- uGCACUGACUGUGGUA--UACGUCAc -3'
miRNA:   3'- cUGUGGCUGAUGCCGUagAUGCAGUu -5'
9626 3' -52.4 NC_002577.1 + 17603 0.68 0.943901
Target:  5'- aACGCCGuGCUGCGGUAgaagACGUCu- -3'
miRNA:   3'- cUGUGGC-UGAUGCCGUaga-UGCAGuu -5'
9626 3' -52.4 NC_002577.1 + 8304 0.69 0.928897
Target:  5'- cGCGCCG-CUGCGGCGUUUagGCGcgCAGc -3'
miRNA:   3'- cUGUGGCuGAUGCCGUAGA--UGCa-GUU- -5'
9626 3' -52.4 NC_002577.1 + 125310 0.69 0.928897
Target:  5'- cGCGCCG-CUGCGGCGUUUagGCGcgCAGc -3'
miRNA:   3'- cUGUGGCuGAUGCCGUAGA--UGCa-GUU- -5'
9626 3' -52.4 NC_002577.1 + 95540 0.7 0.898184
Target:  5'- uGACGCCGACUugaguucACGGCAUCgagACccCAGa -3'
miRNA:   3'- -CUGUGGCUGA-------UGCCGUAGa--UGcaGUU- -5'
9626 3' -52.4 NC_002577.1 + 161066 0.7 0.877864
Target:  5'- cGGCGCUGACcGCGGCcg--GCGUCAu -3'
miRNA:   3'- -CUGUGGCUGaUGCCGuagaUGCAGUu -5'
9626 3' -52.4 NC_002577.1 + 160168 0.7 0.877864
Target:  5'- gGACGCCGAC-GCGGCcUCUuccggaACGUCc- -3'
miRNA:   3'- -CUGUGGCUGaUGCCGuAGA------UGCAGuu -5'
9626 3' -52.4 NC_002577.1 + 137170 0.7 0.877864
Target:  5'- gGACGCCGAC-GCGGCcUCUuccggaACGUCc- -3'
miRNA:   3'- -CUGUGGCUGaUGCCGuAGA------UGCAGuu -5'
9626 3' -52.4 NC_002577.1 + 136272 0.7 0.877864
Target:  5'- cGGCGCUGACcGCGGCcg--GCGUCAu -3'
miRNA:   3'- -CUGUGGCUGaUGCCGuagaUGCAGUu -5'
9626 3' -52.4 NC_002577.1 + 152439 0.77 0.517715
Target:  5'- cGGCAagGACUAUGGCAUCUACGUgAGc -3'
miRNA:   3'- -CUGUggCUGAUGCCGUAGAUGCAgUU- -5'
9626 3' -52.4 NC_002577.1 + 101548 1.07 0.008597
Target:  5'- cGACACCGACUACGGCAUCUACGUCAAa -3'
miRNA:   3'- -CUGUGGCUGAUGCCGUAGAUGCAGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.