miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9626 5' -58.6 NC_002577.1 + 103942 0.66 0.808778
Target:  5'- uGCAGcaGCGGGGcCCUUCGCCUuacggauaGCGc -3'
miRNA:   3'- gUGUCuaCGCCUC-GGAAGCGGG--------CGUa -5'
9626 5' -58.6 NC_002577.1 + 16233 0.66 0.79996
Target:  5'- uCGCAGAacaacCGGuaAGUCUUCGCCgCGCAa -3'
miRNA:   3'- -GUGUCUac---GCC--UCGGAAGCGG-GCGUa -5'
9626 5' -58.6 NC_002577.1 + 136909 0.66 0.79996
Target:  5'- gCACGGGcucgggagaacuUGCGGGGCCggggUCGUaacaaggcuCCGCGg -3'
miRNA:   3'- -GUGUCU------------ACGCCUCGGa---AGCG---------GGCGUa -5'
9626 5' -58.6 NC_002577.1 + 25356 0.66 0.79996
Target:  5'- aGCAGAggggGUGGAaccCCUaUCGUCCGCAc -3'
miRNA:   3'- gUGUCUa---CGCCUc--GGA-AGCGGGCGUa -5'
9626 5' -58.6 NC_002577.1 + 160428 0.66 0.79996
Target:  5'- gCACGGGcucgggagaacuUGCGGGGCCggggUCGUaacaaggcuCCGCGg -3'
miRNA:   3'- -GUGUCU------------ACGCCUCGGa---AGCG---------GGCGUa -5'
9626 5' -58.6 NC_002577.1 + 57988 0.66 0.794597
Target:  5'- -cCAGG-GCGG-GCCUcguuugagucgcgucUCGCCCGUAUu -3'
miRNA:   3'- guGUCUaCGCCuCGGA---------------AGCGGGCGUA- -5'
9626 5' -58.6 NC_002577.1 + 46345 0.66 0.763279
Target:  5'- aGCGGAgucgGCGGAGCCUUUuCCaucaGUAUu -3'
miRNA:   3'- gUGUCUa---CGCCUCGGAAGcGGg---CGUA- -5'
9626 5' -58.6 NC_002577.1 + 43440 0.67 0.734532
Target:  5'- gACAGuucuuUGCGGAGCUguucUCuGUCCGCGc -3'
miRNA:   3'- gUGUCu----ACGCCUCGGa---AG-CGGGCGUa -5'
9626 5' -58.6 NC_002577.1 + 132219 0.67 0.714914
Target:  5'- -cCGGGU-CGGGGCUaggagCGCCCGCGUg -3'
miRNA:   3'- guGUCUAcGCCUCGGaa---GCGGGCGUA- -5'
9626 5' -58.6 NC_002577.1 + 1395 0.67 0.714914
Target:  5'- -cCGGGU-CGGGGCUaggagCGCCCGCGUg -3'
miRNA:   3'- guGUCUAcGCCUCGGaa---GCGGGCGUA- -5'
9626 5' -58.6 NC_002577.1 + 162759 0.67 0.704996
Target:  5'- cCGCGGgcGCGGAGCCgUgGCCCc--- -3'
miRNA:   3'- -GUGUCuaCGCCUCGGaAgCGGGcgua -5'
9626 5' -58.6 NC_002577.1 + 134569 0.67 0.704996
Target:  5'- cCGCGGgcGCGGAGCCgUgGCCCc--- -3'
miRNA:   3'- -GUGUCuaCGCCUCGGaAgCGGGcgua -5'
9626 5' -58.6 NC_002577.1 + 82100 0.7 0.563595
Target:  5'- uUACGGGcgGCGGGGCCUgcgCGCCacuaCGCGc -3'
miRNA:   3'- -GUGUCUa-CGCCUCGGAa--GCGG----GCGUa -5'
9626 5' -58.6 NC_002577.1 + 10522 0.73 0.371344
Target:  5'- cCGCGGGUGCGGGGCCggggggaaagUCGgggggcgaCCCGCGa -3'
miRNA:   3'- -GUGUCUACGCCUCGGa---------AGC--------GGGCGUa -5'
9626 5' -58.6 NC_002577.1 + 123092 0.73 0.371344
Target:  5'- cCGCGGGUGCGGGGCCggggggaaagUCGgggggcgaCCCGCGa -3'
miRNA:   3'- -GUGUCUACGCCUCGGa---------AGC--------GGGCGUa -5'
9626 5' -58.6 NC_002577.1 + 101512 1.04 0.003036
Target:  5'- gCACAGAUGCGGAGCCUUCGCCCGCAUc -3'
miRNA:   3'- -GUGUCUACGCCUCGGAAGCGGGCGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.