miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9628 5' -49.1 NC_002577.1 + 153431 0.66 0.999191
Target:  5'- -aCGUCU---CGGCGAUuucaAUCGAGACGc -3'
miRNA:   3'- caGUAGAucuGCCGCUG----UAGCUUUGC- -5'
9628 5' -49.1 NC_002577.1 + 24414 0.66 0.999191
Target:  5'- -cCAUCaUAcGAUGGCGAU-UUGAAACGg -3'
miRNA:   3'- caGUAG-AU-CUGCCGCUGuAGCUUUGC- -5'
9628 5' -49.1 NC_002577.1 + 138231 0.66 0.999191
Target:  5'- gGUCAUCc-GGCGGUGGCggCGcAGCa -3'
miRNA:   3'- -CAGUAGauCUGCCGCUGuaGCuUUGc -5'
9628 5' -49.1 NC_002577.1 + 159107 0.66 0.999191
Target:  5'- gGUCAUCc-GGCGGUGGCggCGcAGCa -3'
miRNA:   3'- -CAGUAGauCUGCCGCUGuaGCuUUGc -5'
9628 5' -49.1 NC_002577.1 + 130441 0.66 0.99914
Target:  5'- uGUCAUCaagcaccacgucgaUGGACGGaGACugggcgCGAAGCGu -3'
miRNA:   3'- -CAGUAG--------------AUCUGCCgCUGua----GCUUUGC- -5'
9628 5' -49.1 NC_002577.1 + 3173 0.66 0.99914
Target:  5'- uGUCAUCaagcaccacgucgaUGGACGGaGACugggcgCGAAGCGu -3'
miRNA:   3'- -CAGUAG--------------AUCUGCCgCUGua----GCUUUGC- -5'
9628 5' -49.1 NC_002577.1 + 113695 0.66 0.999009
Target:  5'- cGUCGUgUAGAucaccaaagcgaUGGCGuAUGUCGAGAUGc -3'
miRNA:   3'- -CAGUAgAUCU------------GCCGC-UGUAGCUUUGC- -5'
9628 5' -49.1 NC_002577.1 + 144117 0.67 0.998243
Target:  5'- aGUCugaCUAGGCGGUauggacGGCGUaCGAGACa -3'
miRNA:   3'- -CAGua-GAUCUGCCG------CUGUA-GCUUUGc -5'
9628 5' -49.1 NC_002577.1 + 77381 0.68 0.995882
Target:  5'- ------gAGACGGCGAUGUCGAGGa- -3'
miRNA:   3'- caguagaUCUGCCGCUGUAGCUUUgc -5'
9628 5' -49.1 NC_002577.1 + 82828 0.69 0.991391
Target:  5'- --aAUCUacgaaaGGAUGGCGACAUCGuuaguAAGCGc -3'
miRNA:   3'- cagUAGA------UCUGCCGCUGUAGC-----UUUGC- -5'
9628 5' -49.1 NC_002577.1 + 33544 0.69 0.990145
Target:  5'- -gCAUgaUUAGACGGCGACGUUGcauuuGCGc -3'
miRNA:   3'- caGUA--GAUCUGCCGCUGUAGCuu---UGC- -5'
9628 5' -49.1 NC_002577.1 + 157620 0.69 0.988763
Target:  5'- cGUCcUC-GGACGGCGACAuaucguccagggUCGAgagAACGa -3'
miRNA:   3'- -CAGuAGaUCUGCCGCUGU------------AGCU---UUGC- -5'
9628 5' -49.1 NC_002577.1 + 73752 0.7 0.985549
Target:  5'- -gCAUCaAGAgcUGGCGACGuuuaUCGGGACGg -3'
miRNA:   3'- caGUAGaUCU--GCCGCUGU----AGCUUUGC- -5'
9628 5' -49.1 NC_002577.1 + 128814 0.71 0.968653
Target:  5'- -aCGUCggacgGGACGGCGcgGCGUCGucGCGc -3'
miRNA:   3'- caGUAGa----UCUGCCGC--UGUAGCuuUGC- -5'
9628 5' -49.1 NC_002577.1 + 4799 0.71 0.968653
Target:  5'- -aCGUCggacgGGACGGCGcgGCGUCGucGCGc -3'
miRNA:   3'- caGUAGa----UCUGCCGC--UGUAGCuuUGC- -5'
9628 5' -49.1 NC_002577.1 + 105218 0.71 0.965412
Target:  5'- uUCGUCUAGGCGuCGuCAUCGcAACGc -3'
miRNA:   3'- cAGUAGAUCUGCcGCuGUAGCuUUGC- -5'
9628 5' -49.1 NC_002577.1 + 99685 0.71 0.965412
Target:  5'- -cCGUCUAGuuuGCGGUGACAUUGAucuGGCu -3'
miRNA:   3'- caGUAGAUC---UGCCGCUGUAGCU---UUGc -5'
9628 5' -49.1 NC_002577.1 + 90646 0.71 0.965412
Target:  5'- uUCggCUGGccGCGGCGGCAgcaacCGAAGCGu -3'
miRNA:   3'- cAGuaGAUC--UGCCGCUGUa----GCUUUGC- -5'
9628 5' -49.1 NC_002577.1 + 139717 0.73 0.913698
Target:  5'- -cCGUCUcGGACGGCGACAuaucguccagggUCGAgagAACGa -3'
miRNA:   3'- caGUAGA-UCUGCCGCUGU------------AGCU---UUGC- -5'
9628 5' -49.1 NC_002577.1 + 105066 1.09 0.015206
Target:  5'- cGUCAUCUAGACGGCGACAUCGAAACGc -3'
miRNA:   3'- -CAGUAGAUCUGCCGCUGUAGCUUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.