miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9629 3' -49.2 NC_002577.1 + 101792 0.66 0.998808
Target:  5'- --gUGGcGCuCUGGU--UCAAACACGCa -3'
miRNA:   3'- uugAUCaUG-GACCGcuAGUUUGUGCG- -5'
9629 3' -49.2 NC_002577.1 + 127009 0.66 0.998808
Target:  5'- --gUGGUcaauCUUGGCGAUUAAGCcuagauauuGCGCg -3'
miRNA:   3'- uugAUCAu---GGACCGCUAGUUUG---------UGCG- -5'
9629 3' -49.2 NC_002577.1 + 53623 0.66 0.998808
Target:  5'- -uCUAGcgGCC-GGCGuUCGAuguCACGCa -3'
miRNA:   3'- uuGAUCa-UGGaCCGCuAGUUu--GUGCG- -5'
9629 3' -49.2 NC_002577.1 + 77268 0.66 0.998808
Target:  5'- aAAUUAGccgcguCCUGuCGGUCGAGCACGg -3'
miRNA:   3'- -UUGAUCau----GGACcGCUAGUUUGUGCg -5'
9629 3' -49.2 NC_002577.1 + 36119 0.66 0.9979
Target:  5'- uACUGGUAUUUacuccGCGAUCGcuACACGCc -3'
miRNA:   3'- uUGAUCAUGGAc----CGCUAGUu-UGUGCG- -5'
9629 3' -49.2 NC_002577.1 + 124288 0.66 0.997491
Target:  5'- cGCUAGgcugGCCcGGgGcgCGGACGCGg -3'
miRNA:   3'- uUGAUCa---UGGaCCgCuaGUUUGUGCg -5'
9629 3' -49.2 NC_002577.1 + 9326 0.66 0.997491
Target:  5'- cGCUAGgcugGCCcGGgGcgCGGACGCGg -3'
miRNA:   3'- uUGAUCa---UGGaCCgCuaGUUUGUGCg -5'
9629 3' -49.2 NC_002577.1 + 118426 0.67 0.997018
Target:  5'- uGACUAc--CUUGGgGGUgAGACACGCu -3'
miRNA:   3'- -UUGAUcauGGACCgCUAgUUUGUGCG- -5'
9629 3' -49.2 NC_002577.1 + 82307 0.67 0.995849
Target:  5'- -cCUAGUAgC-GGCGcgUAGugGCGCg -3'
miRNA:   3'- uuGAUCAUgGaCCGCuaGUUugUGCG- -5'
9629 3' -49.2 NC_002577.1 + 24013 0.68 0.989954
Target:  5'- ------aGCCUGGCu-UCGGGCGCGCu -3'
miRNA:   3'- uugaucaUGGACCGcuAGUUUGUGCG- -5'
9629 3' -49.2 NC_002577.1 + 31320 0.69 0.978916
Target:  5'- uGCUAGUuaugauggcGCCUacGGCGAUauAACACGUg -3'
miRNA:   3'- uUGAUCA---------UGGA--CCGCUAguUUGUGCG- -5'
9629 3' -49.2 NC_002577.1 + 159562 0.7 0.973739
Target:  5'- uGC-AGUACCU-GCGAgUCAuaGACACGCu -3'
miRNA:   3'- uUGaUCAUGGAcCGCU-AGU--UUGUGCG- -5'
9629 3' -49.2 NC_002577.1 + 137775 0.7 0.973739
Target:  5'- uGC-AGUACCU-GCGAgUCAuaGACACGCu -3'
miRNA:   3'- uUGaUCAUGGAcCGCU-AGU--UUGUGCG- -5'
9629 3' -49.2 NC_002577.1 + 10927 0.71 0.948441
Target:  5'- gGAUgGGUACCgagGGC-AUCGAACugGCc -3'
miRNA:   3'- -UUGaUCAUGGa--CCGcUAGUUUGugCG- -5'
9629 3' -49.2 NC_002577.1 + 122687 0.71 0.948441
Target:  5'- gGAUgGGUACCgagGGC-AUCGAACugGCc -3'
miRNA:   3'- -UUGaUCAUGGa--CCGcUAGUUUGugCG- -5'
9629 3' -49.2 NC_002577.1 + 58351 0.72 0.928443
Target:  5'- cGCgauGUACaUUGGCGAUCGuACugGCg -3'
miRNA:   3'- uUGau-CAUG-GACCGCUAGUuUGugCG- -5'
9629 3' -49.2 NC_002577.1 + 107579 1.1 0.010658
Target:  5'- cAACUAGUACCUGGCGAUCAAACACGCu -3'
miRNA:   3'- -UUGAUCAUGGACCGCUAGUUUGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.