miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9630 3' -52.4 NC_002577.1 + 114500 0.66 0.990066
Target:  5'- cCGUu-CUGCuGGGuuuUGggGGcUGGGGCa -3'
miRNA:   3'- -GCAuuGACGcCCCu--GCuuUC-ACCUCG- -5'
9630 3' -52.4 NC_002577.1 + 101670 0.66 0.988709
Target:  5'- gGUAGaggaCGGGGGCGAGaccAGUGaAGCg -3'
miRNA:   3'- gCAUUgac-GCCCCUGCUU---UCACcUCG- -5'
9630 3' -52.4 NC_002577.1 + 121906 0.66 0.987213
Target:  5'- --gAGCggaGcCGGGGACGGAg--GGGGCg -3'
miRNA:   3'- gcaUUGa--C-GCCCCUGCUUucaCCUCG- -5'
9630 3' -52.4 NC_002577.1 + 11708 0.66 0.987213
Target:  5'- --gAGCggaGcCGGGGACGGAg--GGGGCg -3'
miRNA:   3'- gcaUUGa--C-GCCCCUGCUUucaCCUCG- -5'
9630 3' -52.4 NC_002577.1 + 88444 0.66 0.983767
Target:  5'- uGUAACUGCGGaucacACGAuauuuucugcGGGcGGAGCa -3'
miRNA:   3'- gCAUUGACGCCcc---UGCU----------UUCaCCUCG- -5'
9630 3' -52.4 NC_002577.1 + 8474 0.67 0.977338
Target:  5'- gGUGugUGUGGGGGUGuguGUGGGuguGCg -3'
miRNA:   3'- gCAUugACGCCCCUGCuuuCACCU---CG- -5'
9630 3' -52.4 NC_002577.1 + 121976 0.67 0.977338
Target:  5'- ----gUUGUGGGGGCGGGAggauguGUGGGGg -3'
miRNA:   3'- gcauuGACGCCCCUGCUUU------CACCUCg -5'
9630 3' -52.4 NC_002577.1 + 125140 0.67 0.977338
Target:  5'- gGUGugUGUGGGGGUGuguGUGGGuguGCg -3'
miRNA:   3'- gCAUugACGCCCCUGCuuuCACCU---CG- -5'
9630 3' -52.4 NC_002577.1 + 11637 0.67 0.977338
Target:  5'- ----gUUGUGGGGGCGGGAggauguGUGGGGg -3'
miRNA:   3'- gcauuGACGCCCCUGCUUU------CACCUCg -5'
9630 3' -52.4 NC_002577.1 + 7574 0.67 0.972118
Target:  5'- cCGU---UGCGGGGGgGggGGgggGGGGg -3'
miRNA:   3'- -GCAuugACGCCCCUgCuuUCa--CCUCg -5'
9630 3' -52.4 NC_002577.1 + 126040 0.67 0.972118
Target:  5'- cCGU---UGCGGGGGgGggGGgggGGGGg -3'
miRNA:   3'- -GCAuugACGCCCCUgCuuUCa--CCUCg -5'
9630 3' -52.4 NC_002577.1 + 48707 0.67 0.972118
Target:  5'- uGUAACuUGUGGGGcccCGGgcAGGUGGAucacGCa -3'
miRNA:   3'- gCAUUG-ACGCCCCu--GCU--UUCACCU----CG- -5'
9630 3' -52.4 NC_002577.1 + 119064 0.67 0.969206
Target:  5'- --aGAUaGCGGGGAUGggGGUccAGCa -3'
miRNA:   3'- gcaUUGaCGCCCCUGCuuUCAccUCG- -5'
9630 3' -52.4 NC_002577.1 + 125162 0.7 0.922208
Target:  5'- gGUGugUGUGGGGGUGu--GUGGGGg -3'
miRNA:   3'- gCAUugACGCCCCUGCuuuCACCUCg -5'
9630 3' -52.4 NC_002577.1 + 8452 0.7 0.922208
Target:  5'- gGUGugUGUGGGGGUGu--GUGGGGg -3'
miRNA:   3'- gCAUugACGCCCCUGCuuuCACCUCg -5'
9630 3' -52.4 NC_002577.1 + 140394 0.7 0.922208
Target:  5'- uCGUGGaga-GGGGuugGCGGAGGUGGGGUa -3'
miRNA:   3'- -GCAUUgacgCCCC---UGCUUUCACCUCG- -5'
9630 3' -52.4 NC_002577.1 + 66890 0.7 0.922208
Target:  5'- aCGUGGCUacCGGGGGCGAAuaGGUGcuguAGCc -3'
miRNA:   3'- -GCAUUGAc-GCCCCUGCUU--UCACc---UCG- -5'
9630 3' -52.4 NC_002577.1 + 156944 0.7 0.922208
Target:  5'- uCGUGGaga-GGGGuugGCGGAGGUGGGGUa -3'
miRNA:   3'- -GCAUUgacgCCCC---UGCUUUCACCUCG- -5'
9630 3' -52.4 NC_002577.1 + 153722 0.7 0.916494
Target:  5'- aGUGuggGUGGGuGGCGAAGGUgcugaGGAGCc -3'
miRNA:   3'- gCAUugaCGCCC-CUGCUUUCA-----CCUCG- -5'
9630 3' -52.4 NC_002577.1 + 66570 0.7 0.910537
Target:  5'- aGUAuaaaGCGGGGAaaaaGGAAGgcaUGGAGCu -3'
miRNA:   3'- gCAUuga-CGCCCCUg---CUUUC---ACCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.