miRNA display CGI


Results 1 - 20 of 26 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9630 5' -58.1 NC_002577.1 + 137989 0.66 0.8367
Target:  5'- gGGcGCUACCgcacaUCGCCGCCaGCgugucuaugACUCg-- -3'
miRNA:   3'- -CC-CGAUGGa----AGCGGCGG-CG---------UGAGacu -5'
9630 5' -58.1 NC_002577.1 + 159349 0.66 0.8367
Target:  5'- gGGcGCUACCgcacaUCGCCGCCaGCgugucuaugACUCg-- -3'
miRNA:   3'- -CC-CGAUGGa----AGCGGCGG-CG---------UGAGacu -5'
9630 5' -58.1 NC_002577.1 + 147450 0.66 0.8367
Target:  5'- gGGGCcGCUgaUCuCUGCCGCgcuGCUCUGGa -3'
miRNA:   3'- -CCCGaUGGa-AGcGGCGGCG---UGAGACU- -5'
9630 5' -58.1 NC_002577.1 + 26857 0.66 0.828545
Target:  5'- cGGCUACCUgaCGCCG-CGUACUgCUu- -3'
miRNA:   3'- cCCGAUGGAa-GCGGCgGCGUGA-GAcu -5'
9630 5' -58.1 NC_002577.1 + 115462 0.66 0.820218
Target:  5'- cGGGCUcuuGCCgggUGCUGaaugagggucaCGCAUUCUGAg -3'
miRNA:   3'- -CCCGA---UGGaa-GCGGCg----------GCGUGAGACU- -5'
9630 5' -58.1 NC_002577.1 + 141280 0.67 0.803079
Target:  5'- cGGGCaGCCUU-GCCGgCGCACg---- -3'
miRNA:   3'- -CCCGaUGGAAgCGGCgGCGUGagacu -5'
9630 5' -58.1 NC_002577.1 + 156058 0.67 0.803079
Target:  5'- cGGGCaGCCUU-GCCGgCGCACg---- -3'
miRNA:   3'- -CCCGaUGGAAgCGGCgGCGUGagacu -5'
9630 5' -58.1 NC_002577.1 + 51367 0.67 0.767084
Target:  5'- aGGCagAUCUgaaaguaaUCGCCGCgGCACUUUGc -3'
miRNA:   3'- cCCGa-UGGA--------AGCGGCGgCGUGAGACu -5'
9630 5' -58.1 NC_002577.1 + 7 0.68 0.729246
Target:  5'- uGGGCcgcaGCCUccCGCCGCCacagguGCACUCa-- -3'
miRNA:   3'- -CCCGa---UGGAa-GCGGCGG------CGUGAGacu -5'
9630 5' -58.1 NC_002577.1 + 133606 0.68 0.729246
Target:  5'- uGGGCcgcaGCCUccCGCCGCCacagguGCACUCa-- -3'
miRNA:   3'- -CCCGa---UGGAa-GCGGCGG------CGUGAGacu -5'
9630 5' -58.1 NC_002577.1 + 19830 0.69 0.690118
Target:  5'- cGGCgcgGCaugguaUUCGgCGCCGCACUCg-- -3'
miRNA:   3'- cCCGa--UGg-----AAGCgGCGGCGUGAGacu -5'
9630 5' -58.1 NC_002577.1 + 136314 0.69 0.660256
Target:  5'- aGGCgaaGCCUgcugaUGCCGCauccaagcggugCGCGCUCUGAg -3'
miRNA:   3'- cCCGa--UGGAa----GCGGCG------------GCGUGAGACU- -5'
9630 5' -58.1 NC_002577.1 + 161024 0.69 0.660256
Target:  5'- aGGCgaaGCCUgcugaUGCCGCauccaagcggugCGCGCUCUGAg -3'
miRNA:   3'- cCCGa--UGGAa----GCGGCG------------GCGUGAGACU- -5'
9630 5' -58.1 NC_002577.1 + 77800 0.69 0.659256
Target:  5'- aGGGCUGCUUUCucgaaccuGCCGCCGUuucauccgacacgACUucCUGGg -3'
miRNA:   3'- -CCCGAUGGAAG--------CGGCGGCG-------------UGA--GACU- -5'
9630 5' -58.1 NC_002577.1 + 159714 0.7 0.650248
Target:  5'- cGGGaugaGCCcg-GCCGCCGUACUUUGGg -3'
miRNA:   3'- -CCCga--UGGaagCGGCGGCGUGAGACU- -5'
9630 5' -58.1 NC_002577.1 + 137624 0.7 0.650248
Target:  5'- cGGGaugaGCCcg-GCCGCCGUACUUUGGg -3'
miRNA:   3'- -CCCga--UGGaagCGGCGGCGUGAGACU- -5'
9630 5' -58.1 NC_002577.1 + 105771 0.71 0.59017
Target:  5'- cGGGCcgGCCUUCccaGCCgGCCGCuCUCUc- -3'
miRNA:   3'- -CCCGa-UGGAAG---CGG-CGGCGuGAGAcu -5'
9630 5' -58.1 NC_002577.1 + 162572 0.71 0.560432
Target:  5'- aGGGCgaaaggaccccGCUUUCGCCGCCGCucCUCc-- -3'
miRNA:   3'- -CCCGa----------UGGAAGCGGCGGCGu-GAGacu -5'
9630 5' -58.1 NC_002577.1 + 134755 0.71 0.560432
Target:  5'- aGGGCgaaaggaccccGCUUUCGCCGCCGCucCUCc-- -3'
miRNA:   3'- -CCCGa----------UGGAAGCGGCGGCGu-GAGacu -5'
9630 5' -58.1 NC_002577.1 + 134897 0.71 0.540836
Target:  5'- cGGGCUcGCCggCGCUuCUGCGCUaCUGAa -3'
miRNA:   3'- -CCCGA-UGGaaGCGGcGGCGUGA-GACU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.