miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9631 5' -58.5 NC_002577.1 + 137701 0.66 0.854285
Target:  5'- uCCCCG-AAUACcGauuggUCGCGC-CCGCg -3'
miRNA:   3'- -GGGGCgUUGUGuCga---AGCGCGcGGCG- -5'
9631 5' -58.5 NC_002577.1 + 11890 0.66 0.854285
Target:  5'- aCCCgggCGCgGACGCggacgaGGCgcaCGCGCGCCuGCu -3'
miRNA:   3'- -GGG---GCG-UUGUG------UCGaa-GCGCGCGG-CG- -5'
9631 5' -58.5 NC_002577.1 + 159637 0.66 0.854285
Target:  5'- uCCCCG-AAUACcGauuggUCGCGC-CCGCg -3'
miRNA:   3'- -GGGGCgUUGUGuCga---AGCGCGcGGCG- -5'
9631 5' -58.5 NC_002577.1 + 98214 0.66 0.854285
Target:  5'- cUCUCGgaGACGCGGC-UCGCaCGCCaGCu -3'
miRNA:   3'- -GGGGCg-UUGUGUCGaAGCGcGCGG-CG- -5'
9631 5' -58.5 NC_002577.1 + 121808 0.66 0.854285
Target:  5'- aCCCgggCGCgGACGCggacgaGGCgcaCGCGCGCCuGCu -3'
miRNA:   3'- -GGG---GCG-UUGUG------UCGaa-GCGCGCGG-CG- -5'
9631 5' -58.5 NC_002577.1 + 162496 0.66 0.851237
Target:  5'- uUCCGCAGCccuaGGgaUCGCGauucuucgguacaGCCGCg -3'
miRNA:   3'- gGGGCGUUGug--UCgaAGCGCg------------CGGCG- -5'
9631 5' -58.5 NC_002577.1 + 134832 0.66 0.851237
Target:  5'- uUCCGCAGCccuaGGgaUCGCGauucuucgguacaGCCGCg -3'
miRNA:   3'- gGGGCGUUGug--UCgaAGCGCg------------CGGCG- -5'
9631 5' -58.5 NC_002577.1 + 11784 0.66 0.846609
Target:  5'- cCCCCGCcGCAUcGCguucCGCcGgGCCGg -3'
miRNA:   3'- -GGGGCGuUGUGuCGaa--GCG-CgCGGCg -5'
9631 5' -58.5 NC_002577.1 + 121723 0.66 0.846609
Target:  5'- cCUCCGUccC-CGGCUccgcucUCGCGCuCCGCa -3'
miRNA:   3'- -GGGGCGuuGuGUCGA------AGCGCGcGGCG- -5'
9631 5' -58.5 NC_002577.1 + 121829 0.66 0.846609
Target:  5'- cCCCCGCcGCAUcGCguucCGCcGgGCCGg -3'
miRNA:   3'- -GGGGCGuUGUGuCGaa--GCG-CgCGGCg -5'
9631 5' -58.5 NC_002577.1 + 133940 0.66 0.846609
Target:  5'- uCCgCCGC-GCGCAuGC-UCGCuagggucCGCCGCg -3'
miRNA:   3'- -GG-GGCGuUGUGU-CGaAGCGc------GCGGCG- -5'
9631 5' -58.5 NC_002577.1 + 11891 0.66 0.846609
Target:  5'- cCUCCGUccC-CGGCUccgcucUCGCGCuCCGCa -3'
miRNA:   3'- -GGGGCGuuGuGUCGA------AGCGCGcGGCG- -5'
9631 5' -58.5 NC_002577.1 + 140403 0.66 0.846609
Target:  5'- cCCCCGUAccagggGCGCgGGCUUCcaguaCGUcuGCCGCc -3'
miRNA:   3'- -GGGGCGU------UGUG-UCGAAGc----GCG--CGGCG- -5'
9631 5' -58.5 NC_002577.1 + 156934 0.66 0.846609
Target:  5'- cCCCCGUAccagggGCGCgGGCUUCcaguaCGUcuGCCGCc -3'
miRNA:   3'- -GGGGCGU------UGUG-UCGAAGc----GCG--CGGCG- -5'
9631 5' -58.5 NC_002577.1 + 163387 0.66 0.846609
Target:  5'- uCCgCCGC-GCGCAuGC-UCGCuagggucCGCCGCg -3'
miRNA:   3'- -GG-GGCGuUGUGU-CGaAGCGc------GCGGCG- -5'
9631 5' -58.5 NC_002577.1 + 103744 0.66 0.84427
Target:  5'- gCCUGgGGagauuggaauCAGCUUCuuaugguaccggggGCGCGCCGCu -3'
miRNA:   3'- gGGGCgUUgu--------GUCGAAG--------------CGCGCGGCG- -5'
9631 5' -58.5 NC_002577.1 + 75132 0.66 0.841915
Target:  5'- aCCUCGCGACGCGGCgUCaCGUuuccagucggaacaCCGCa -3'
miRNA:   3'- -GGGGCGUUGUGUCGaAGcGCGc-------------GGCG- -5'
9631 5' -58.5 NC_002577.1 + 161110 0.66 0.838749
Target:  5'- cCCCCGgGGgGCgAGC--CGgGCGCCGg -3'
miRNA:   3'- -GGGGCgUUgUG-UCGaaGCgCGCGGCg -5'
9631 5' -58.5 NC_002577.1 + 40500 0.66 0.838749
Target:  5'- cCCUCGCAuuaACGGCgaCGCGaCGCUa- -3'
miRNA:   3'- -GGGGCGUug-UGUCGaaGCGC-GCGGcg -5'
9631 5' -58.5 NC_002577.1 + 95697 0.66 0.838749
Target:  5'- gUCCGUAGCACAcuGUucuUUgGCGCGuuGUa -3'
miRNA:   3'- gGGGCGUUGUGU--CG---AAgCGCGCggCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.