miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9632 3' -47 NC_002577.1 + 129439 0.66 0.999852
Target:  5'- aGGACGUGgacacgaguCCUGCGCucGCACAGg-- -3'
miRNA:   3'- aUUUGCAU---------GGGUGCGuuUGUGUCaaa -5'
9632 3' -47 NC_002577.1 + 4174 0.66 0.999852
Target:  5'- aGGACGUGgacacgaguCCUGCGCucGCACAGg-- -3'
miRNA:   3'- aUUUGCAU---------GGGUGCGuuUGUGUCaaa -5'
9632 3' -47 NC_002577.1 + 70920 0.67 0.999597
Target:  5'- uUGGACG-GCCCGCGUcuuGGCGCuGUUg -3'
miRNA:   3'- -AUUUGCaUGGGUGCGu--UUGUGuCAAa -5'
9632 3' -47 NC_002577.1 + 38701 0.67 0.999597
Target:  5'- cUGAACGU-CUCGCGCAuACACGu--- -3'
miRNA:   3'- -AUUUGCAuGGGUGCGUuUGUGUcaaa -5'
9632 3' -47 NC_002577.1 + 133527 0.67 0.999208
Target:  5'- aUGAACGcGCagcauUGCGCGGACACAGUg- -3'
miRNA:   3'- -AUUUGCaUGg----GUGCGUUUGUGUCAaa -5'
9632 3' -47 NC_002577.1 + 86 0.67 0.999208
Target:  5'- aUGAACGcGCagcauUGCGCGGACACAGUg- -3'
miRNA:   3'- -AUUUGCaUGg----GUGCGUUUGUGUCAaa -5'
9632 3' -47 NC_002577.1 + 47941 0.68 0.997853
Target:  5'- -uAugGUAUCCACGCcuguaccaAGGCAUAGUg- -3'
miRNA:   3'- auUugCAUGGGUGCG--------UUUGUGUCAaa -5'
9632 3' -47 NC_002577.1 + 9328 0.69 0.99635
Target:  5'- cUAGGCugGCCCgggGCGCGGACGCGGUc- -3'
miRNA:   3'- -AUUUGcaUGGG---UGCGUUUGUGUCAaa -5'
9632 3' -47 NC_002577.1 + 124286 0.69 0.99635
Target:  5'- cUAGGCugGCCCgggGCGCGGACGCGGUc- -3'
miRNA:   3'- -AUUUGcaUGGG---UGCGUUUGUGUCAaa -5'
9632 3' -47 NC_002577.1 + 57662 0.7 0.994074
Target:  5'- aGAACGagGCCgGCGCGGGCGCAa--- -3'
miRNA:   3'- aUUUGCa-UGGgUGCGUUUGUGUcaaa -5'
9632 3' -47 NC_002577.1 + 121817 0.71 0.982244
Target:  5'- cGGGCGacgACCCggGCGCGGACGCGGa-- -3'
miRNA:   3'- aUUUGCa--UGGG--UGCGUUUGUGUCaaa -5'
9632 3' -47 NC_002577.1 + 11881 0.71 0.982244
Target:  5'- cGGGCGacgACCCggGCGCGGACGCGGa-- -3'
miRNA:   3'- aUUUGCa--UGGG--UGCGUUUGUGUCaaa -5'
9632 3' -47 NC_002577.1 + 98845 0.71 0.979989
Target:  5'- gGAACGUcgaCUACGCAGACaACGGUUa -3'
miRNA:   3'- aUUUGCAug-GGUGCGUUUG-UGUCAAa -5'
9632 3' -47 NC_002577.1 + 51602 0.72 0.968814
Target:  5'- gGAAUuaaagGCCCACGCAGAUAUGGUUUc -3'
miRNA:   3'- aUUUGca---UGGGUGCGUUUGUGUCAAA- -5'
9632 3' -47 NC_002577.1 + 37926 0.74 0.944691
Target:  5'- gAAGCGUGCgCCauACGCAAAUGCGGUc- -3'
miRNA:   3'- aUUUGCAUG-GG--UGCGUUUGUGUCAaa -5'
9632 3' -47 NC_002577.1 + 125593 0.74 0.9345
Target:  5'- --uGCGUAUguccgCCGCGCAGACGCAGa-- -3'
miRNA:   3'- auuUGCAUG-----GGUGCGUUUGUGUCaaa -5'
9632 3' -47 NC_002577.1 + 8021 0.74 0.9345
Target:  5'- --uGCGUAUguccgCCGCGCAGACGCAGa-- -3'
miRNA:   3'- auuUGCAUG-----GGUGCGUUUGUGUCaaa -5'
9632 3' -47 NC_002577.1 + 118520 1.05 0.03309
Target:  5'- gUAAACGUACCCACGCAAACACAGUUUg -3'
miRNA:   3'- -AUUUGCAUGGGUGCGUUUGUGUCAAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.