miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9632 5' -57.2 NC_002577.1 + 9026 0.66 0.871592
Target:  5'- -aGGCCCGcgGUgCGCGCgaaGGGUUAGUu -3'
miRNA:   3'- aaUUGGGCaaCAgGCGUG---CCCGGUCA- -5'
9632 5' -57.2 NC_002577.1 + 122478 0.66 0.871592
Target:  5'- -cGGCCCGccGUCCgaaaGCGCGGGaCCgcGGUa -3'
miRNA:   3'- aaUUGGGCaaCAGG----CGUGCCC-GG--UCA- -5'
9632 5' -57.2 NC_002577.1 + 124588 0.66 0.871592
Target:  5'- -aGGCCCGcgGUgCGCGCgaaGGGUUAGUu -3'
miRNA:   3'- aaUUGGGCaaCAgGCGUG---CCCGGUCA- -5'
9632 5' -57.2 NC_002577.1 + 11136 0.66 0.871592
Target:  5'- -cGGCCCGccGUCCgaaaGCGCGGGaCCgcGGUa -3'
miRNA:   3'- aaUUGGGCaaCAGG----CGUGCCC-GG--UCA- -5'
9632 5' -57.2 NC_002577.1 + 26239 0.66 0.864169
Target:  5'- cUUGGCCCGcaaa-CGCAgguCGGGCCGGa -3'
miRNA:   3'- -AAUUGGGCaacagGCGU---GCCCGGUCa -5'
9632 5' -57.2 NC_002577.1 + 141111 0.66 0.864169
Target:  5'- --uGCCCGcgacgGgagCCGCGCGGGCaGGg -3'
miRNA:   3'- aauUGGGCaa---Ca--GGCGUGCCCGgUCa -5'
9632 5' -57.2 NC_002577.1 + 156227 0.66 0.864169
Target:  5'- --uGCCCGcgacgGgagCCGCGCGGGCaGGg -3'
miRNA:   3'- aauUGGGCaa---Ca--GGCGUGCCCGgUCa -5'
9632 5' -57.2 NC_002577.1 + 11025 0.66 0.840672
Target:  5'- ---uCCCGUUGggaUCGCAgGcGGCCGGg -3'
miRNA:   3'- aauuGGGCAACa--GGCGUgC-CCGGUCa -5'
9632 5' -57.2 NC_002577.1 + 122589 0.66 0.840672
Target:  5'- ---uCCCGUUGggaUCGCAgGcGGCCGGg -3'
miRNA:   3'- aauuGGGCAACa--GGCGUgC-CCGGUCa -5'
9632 5' -57.2 NC_002577.1 + 8031 0.66 0.832453
Target:  5'- aUAACgCGgcGuuUCCGCucCGGGCCGGa -3'
miRNA:   3'- aAUUGgGCaaC--AGGCGu-GCCCGGUCa -5'
9632 5' -57.2 NC_002577.1 + 125582 0.66 0.832453
Target:  5'- aUAACgCGgcGuuUCCGCucCGGGCCGGa -3'
miRNA:   3'- aAUUGgGCaaC--AGGCGu-GCCCGGUCa -5'
9632 5' -57.2 NC_002577.1 + 23674 0.67 0.806738
Target:  5'- gUAAUCCGcgauUUGUUgUGCGCGGGCCAu- -3'
miRNA:   3'- aAUUGGGC----AACAG-GCGUGCCCGGUca -5'
9632 5' -57.2 NC_002577.1 + 124085 0.68 0.770288
Target:  5'- -aAGCCCucagaccgcGUCCGCGCcccGGGCCAGc -3'
miRNA:   3'- aaUUGGGcaa------CAGGCGUG---CCCGGUCa -5'
9632 5' -57.2 NC_002577.1 + 9529 0.68 0.770288
Target:  5'- -aAGCCCucagaccgcGUCCGCGCcccGGGCCAGc -3'
miRNA:   3'- aaUUGGGcaa------CAGGCGUG---CCCGGUCa -5'
9632 5' -57.2 NC_002577.1 + 118485 1.04 0.004554
Target:  5'- cUUAACCCGUUGUCCGCACGGGCCAGUc -3'
miRNA:   3'- -AAUUGGGCAACAGGCGUGCCCGGUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.