miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9634 3' -59 NC_002577.1 + 160166 0.67 0.755724
Target:  5'- -gCGGACGCCgacGCGGCcucuuccgGAACGUccgAGGg -3'
miRNA:   3'- uaGCCUGCGG---CGCCG--------CUUGCGca-UCC- -5'
9634 3' -59 NC_002577.1 + 137172 0.67 0.755724
Target:  5'- -gCGGACGCCgacGCGGCcucuuccgGAACGUccgAGGg -3'
miRNA:   3'- uaGCCUGCGG---CGCCG--------CUUGCGca-UCC- -5'
9634 3' -59 NC_002577.1 + 102691 0.67 0.746424
Target:  5'- -cUGGACGCgCGuCGGCGAACcuCGUgaccGGGa -3'
miRNA:   3'- uaGCCUGCG-GC-GCCGCUUGc-GCA----UCC- -5'
9634 3' -59 NC_002577.1 + 122560 0.67 0.746424
Target:  5'- -cCGGGCGaaccgCGCGGCGAACGaacccguccCGUuGGGa -3'
miRNA:   3'- uaGCCUGCg----GCGCCGCUUGC---------GCA-UCC- -5'
9634 3' -59 NC_002577.1 + 10690 0.67 0.746424
Target:  5'- -cCGGACGCCGCGaGgGu-CGCGgcccgaAGGc -3'
miRNA:   3'- uaGCCUGCGGCGC-CgCuuGCGCa-----UCC- -5'
9634 3' -59 NC_002577.1 + 122924 0.67 0.746424
Target:  5'- -cCGGACGCCGCGaGgGu-CGCGgcccgaAGGc -3'
miRNA:   3'- uaGCCUGCGGCGC-CgCuuGCGCa-----UCC- -5'
9634 3' -59 NC_002577.1 + 11054 0.67 0.746424
Target:  5'- -cCGGGCGaaccgCGCGGCGAACGaacccguccCGUuGGGa -3'
miRNA:   3'- uaGCCUGCg----GCGCCGCUUGC---------GCA-UCC- -5'
9634 3' -59 NC_002577.1 + 109495 0.68 0.737031
Target:  5'- -gCGGACGCUGCGG-GAcgACGgcauuuaccuacUGUAGGg -3'
miRNA:   3'- uaGCCUGCGGCGCCgCU--UGC------------GCAUCC- -5'
9634 3' -59 NC_002577.1 + 81268 0.68 0.737031
Target:  5'- --aGGugGCCGCgGGCGuGGCGCagcacgGGGa -3'
miRNA:   3'- uagCCugCGGCG-CCGC-UUGCGca----UCC- -5'
9634 3' -59 NC_002577.1 + 4790 0.68 0.727552
Target:  5'- --gGGACGgCGCGGCGucgucGCGCGccgcGGa -3'
miRNA:   3'- uagCCUGCgGCGCCGCu----UGCGCau--CC- -5'
9634 3' -59 NC_002577.1 + 128823 0.68 0.727552
Target:  5'- --gGGACGgCGCGGCGucgucGCGCGccgcGGa -3'
miRNA:   3'- uagCCUGCgGCGCCGCu----UGCGCau--CC- -5'
9634 3' -59 NC_002577.1 + 121818 0.68 0.717997
Target:  5'- -cCGGGCGacgacCCGgGcGCGGACGCGgacgAGGc -3'
miRNA:   3'- uaGCCUGC-----GGCgC-CGCUUGCGCa---UCC- -5'
9634 3' -59 NC_002577.1 + 11880 0.68 0.717997
Target:  5'- -cCGGGCGacgacCCGgGcGCGGACGCGgacgAGGc -3'
miRNA:   3'- uaGCCUGC-----GGCgC-CGCUUGCGCa---UCC- -5'
9634 3' -59 NC_002577.1 + 137575 0.68 0.708373
Target:  5'- -cCGcGACGCCcCGGCGcACGCGgucguGGa -3'
miRNA:   3'- uaGC-CUGCGGcGCCGCuUGCGCau---CC- -5'
9634 3' -59 NC_002577.1 + 159763 0.68 0.708373
Target:  5'- -cCGcGACGCCcCGGCGcACGCGgucguGGa -3'
miRNA:   3'- uaGC-CUGCGGcGCCGCuUGCGCau---CC- -5'
9634 3' -59 NC_002577.1 + 124585 0.68 0.688953
Target:  5'- -cCGaGGC-CCGCGGUGcGCGCGaAGGg -3'
miRNA:   3'- uaGC-CUGcGGCGCCGCuUGCGCaUCC- -5'
9634 3' -59 NC_002577.1 + 9029 0.68 0.688953
Target:  5'- -cCGaGGC-CCGCGGUGcGCGCGaAGGg -3'
miRNA:   3'- uaGC-CUGcGGCGCCGCuUGCGCaUCC- -5'
9634 3' -59 NC_002577.1 + 158313 0.69 0.669357
Target:  5'- --gGGAgCGCgGUGGCGGGCGgGgGGGg -3'
miRNA:   3'- uagCCU-GCGgCGCCGCUUGCgCaUCC- -5'
9634 3' -59 NC_002577.1 + 139024 0.69 0.669357
Target:  5'- --gGGAgCGCgGUGGCGGGCGgGgGGGg -3'
miRNA:   3'- uagCCU-GCGgCGCCGCUUGCgCaUCC- -5'
9634 3' -59 NC_002577.1 + 9915 0.69 0.649648
Target:  5'- -aUGGACggGCCGCGGCGu-CGCGgcGu -3'
miRNA:   3'- uaGCCUG--CGGCGCCGCuuGCGCauCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.