miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9634 5' -57.5 NC_002577.1 + 124863 0.66 0.873884
Target:  5'- gCUCCUcCCCgucgcgaaacuguaUCCCCCGCACAaacaCCUg -3'
miRNA:   3'- -GGGGAaGGGa-------------AGGGGGUGUGUa---GGAg -5'
9634 5' -57.5 NC_002577.1 + 8751 0.66 0.873884
Target:  5'- gCUCCUcCCCgucgcgaaacuguaUCCCCCGCACAaacaCCUg -3'
miRNA:   3'- -GGGGAaGGGa-------------AGGGGGUGUGUa---GGAg -5'
9634 5' -57.5 NC_002577.1 + 5717 0.66 0.871014
Target:  5'- cCCCCcUCCCUucuUCCCCC-CucccuUCUUCc -3'
miRNA:   3'- -GGGGaAGGGA---AGGGGGuGugu--AGGAG- -5'
9634 5' -57.5 NC_002577.1 + 5807 0.66 0.871014
Target:  5'- cCCCCcUCCCUucuUCCCCC-CucccuUCUUCc -3'
miRNA:   3'- -GGGGaAGGGA---AGGGGGuGugu--AGGAG- -5'
9634 5' -57.5 NC_002577.1 + 5777 0.66 0.871014
Target:  5'- cCCCCcUCCCUucuUCCCCC-CucccuUCUUCc -3'
miRNA:   3'- -GGGGaAGGGA---AGGGGGuGugu--AGGAG- -5'
9634 5' -57.5 NC_002577.1 + 5747 0.66 0.871014
Target:  5'- cCCCCcUCCCUucuUCCCCC-CucccuUCUUCc -3'
miRNA:   3'- -GGGGaAGGGA---AGGGGGuGugu--AGGAG- -5'
9634 5' -57.5 NC_002577.1 + 5837 0.66 0.871014
Target:  5'- cCCCCcUCCCUucuUCCCCC-CucccuUCUUCc -3'
miRNA:   3'- -GGGGaAGGGA---AGGGGGuGugu--AGGAG- -5'
9634 5' -57.5 NC_002577.1 + 127777 0.66 0.871014
Target:  5'- cCCCCcUCCCUucuUCCCCC-CucccuUCUUCc -3'
miRNA:   3'- -GGGGaAGGGA---AGGGGGuGugu--AGGAG- -5'
9634 5' -57.5 NC_002577.1 + 127807 0.66 0.871014
Target:  5'- cCCCCcUCCCUucuUCCCCC-CucccuUCUUCc -3'
miRNA:   3'- -GGGGaAGGGA---AGGGGGuGugu--AGGAG- -5'
9634 5' -57.5 NC_002577.1 + 127837 0.66 0.871014
Target:  5'- cCCCCcUCCCUucuUCCCCC-CucccuUCUUCc -3'
miRNA:   3'- -GGGGaAGGGA---AGGGGGuGugu--AGGAG- -5'
9634 5' -57.5 NC_002577.1 + 127897 0.66 0.871014
Target:  5'- cCCCCcUCCCUucuUCCCCC-CucccuUCUUCc -3'
miRNA:   3'- -GGGGaAGGGA---AGGGGGuGugu--AGGAG- -5'
9634 5' -57.5 NC_002577.1 + 127867 0.66 0.871014
Target:  5'- cCCCCcUCCCUucuUCCCCC-CucccuUCUUCc -3'
miRNA:   3'- -GGGGaAGGGA---AGGGGGuGugu--AGGAG- -5'
9634 5' -57.5 NC_002577.1 + 130018 0.66 0.863695
Target:  5'- gCCC-UCUCUcgCCCCUcCGCGUCCg- -3'
miRNA:   3'- gGGGaAGGGAa-GGGGGuGUGUAGGag -5'
9634 5' -57.5 NC_002577.1 + 3596 0.66 0.863695
Target:  5'- gCCC-UCUCUcgCCCCUcCGCGUCCg- -3'
miRNA:   3'- gGGGaAGGGAa-GGGGGuGUGUAGGag -5'
9634 5' -57.5 NC_002577.1 + 138627 0.66 0.848458
Target:  5'- cCUCCUcgUCCgCUUCCUCUuccuCGUCCUCu -3'
miRNA:   3'- -GGGGA--AGG-GAAGGGGGugu-GUAGGAG- -5'
9634 5' -57.5 NC_002577.1 + 158710 0.66 0.848458
Target:  5'- cCUCCUcgUCCgCUUCCUCUuccuCGUCCUCu -3'
miRNA:   3'- -GGGGA--AGG-GAAGGGGGugu-GUAGGAG- -5'
9634 5' -57.5 NC_002577.1 + 125302 0.67 0.840553
Target:  5'- aCCCCccCCCccCCCCCGC-CAUCgaCa -3'
miRNA:   3'- -GGGGaaGGGaaGGGGGUGuGUAGgaG- -5'
9634 5' -57.5 NC_002577.1 + 8312 0.67 0.840553
Target:  5'- aCCCCccCCCccCCCCCGC-CAUCgaCa -3'
miRNA:   3'- -GGGGaaGGGaaGGGGGUGuGUAGgaG- -5'
9634 5' -57.5 NC_002577.1 + 127599 0.67 0.832466
Target:  5'- nCCCCUUCCCcucUUCUCCCcC-CccCCUCc -3'
miRNA:   3'- -GGGGAAGGG---AAGGGGGuGuGuaGGAG- -5'
9634 5' -57.5 NC_002577.1 + 122058 0.67 0.832466
Target:  5'- cCUCCUUCCCccccUCCCCCuucuucuCcCGUCCg- -3'
miRNA:   3'- -GGGGAAGGGa---AGGGGGu------GuGUAGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.