miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9635 3' -54.5 NC_002577.1 + 6651 0.66 0.945241
Target:  5'- -gCGUGgggGGggGgGGAGGCcugaacgGCCGGcgCg -3'
miRNA:   3'- caGUAU---UCuuCgCCUCCG-------CGGCCuaG- -5'
9635 3' -54.5 NC_002577.1 + 126962 0.66 0.945241
Target:  5'- -gCGUGgggGGggGgGGAGGCcugaacgGCCGGcgCg -3'
miRNA:   3'- caGUAU---UCuuCgCCUCCG-------CGGCCuaG- -5'
9635 3' -54.5 NC_002577.1 + 11683 0.66 0.941108
Target:  5'- uUCGggAAGAgcGGgGGAGGCGCCGu--- -3'
miRNA:   3'- cAGUa-UUCU--UCgCCUCCGCGGCcuag -5'
9635 3' -54.5 NC_002577.1 + 121930 0.66 0.941108
Target:  5'- uUCGggAAGAgcGGgGGAGGCGCCGu--- -3'
miRNA:   3'- cAGUa-UUCU--UCgCCUCCGCGGCcuag -5'
9635 3' -54.5 NC_002577.1 + 2555 0.66 0.936286
Target:  5'- -gCAgGGGAGGCGuuuAGGgGUCGGGUCg -3'
miRNA:   3'- caGUaUUCUUCGCc--UCCgCGGCCUAG- -5'
9635 3' -54.5 NC_002577.1 + 131059 0.66 0.936286
Target:  5'- -gCAgGGGAGGCGuuuAGGgGUCGGGUCg -3'
miRNA:   3'- caGUaUUCUUCGCc--UCCgCGGCCUAG- -5'
9635 3' -54.5 NC_002577.1 + 160361 0.67 0.925906
Target:  5'- cGUCcgcguuUGGGAAGguccCGGAcaGGCGCCGGAc- -3'
miRNA:   3'- -CAGu-----AUUCUUC----GCCU--CCGCGGCCUag -5'
9635 3' -54.5 NC_002577.1 + 136977 0.67 0.925906
Target:  5'- cGUCcgcguuUGGGAAGguccCGGAcaGGCGCCGGAc- -3'
miRNA:   3'- -CAGu-----AUUCUUC----GCCU--CCGCGGCCUag -5'
9635 3' -54.5 NC_002577.1 + 126427 0.67 0.914546
Target:  5'- gGUCGUGAGggGaGGGGGgGCUGaGUUu -3'
miRNA:   3'- -CAGUAUUCuuCgCCUCCgCGGCcUAG- -5'
9635 3' -54.5 NC_002577.1 + 7187 0.67 0.914546
Target:  5'- gGUCGUGAGggGaGGGGGgGCUGaGUUu -3'
miRNA:   3'- -CAGUAUUCuuCgCCUCCgCGGCcUAG- -5'
9635 3' -54.5 NC_002577.1 + 138525 0.68 0.881925
Target:  5'- --gAUGGGAAGCGcGGGuCGCCGGcgUg -3'
miRNA:   3'- cagUAUUCUUCGCcUCC-GCGGCCuaG- -5'
9635 3' -54.5 NC_002577.1 + 158813 0.68 0.881925
Target:  5'- --gAUGGGAAGCGcGGGuCGCCGGcgUg -3'
miRNA:   3'- cagUAUUCUUCGCcUCC-GCGGCCuaG- -5'
9635 3' -54.5 NC_002577.1 + 128148 0.69 0.818252
Target:  5'- -aCAaagGGGAGGUaGAGGCGUCGGAUg -3'
miRNA:   3'- caGUa--UUCUUCGcCUCCGCGGCCUAg -5'
9635 3' -54.5 NC_002577.1 + 5461 0.69 0.818252
Target:  5'- ----gGGGAGGUaGAGGCGUCGGAUg -3'
miRNA:   3'- caguaUUCUUCGcCUCCGCGGCCUAg -5'
9635 3' -54.5 NC_002577.1 + 140392 0.7 0.772588
Target:  5'- uGUCGUgGAGAgggguuGGCGGAGGUgggguagacGCCGGAg- -3'
miRNA:   3'- -CAGUA-UUCU------UCGCCUCCG---------CGGCCUag -5'
9635 3' -54.5 NC_002577.1 + 156946 0.7 0.772588
Target:  5'- uGUCGUgGAGAgggguuGGCGGAGGUgggguagacGCCGGAg- -3'
miRNA:   3'- -CAGUA-UUCU------UCGCCUCCG---------CGGCCUag -5'
9635 3' -54.5 NC_002577.1 + 154863 0.7 0.772588
Target:  5'- ----gGGGggGgGGGGGCGC-GGGUCg -3'
miRNA:   3'- caguaUUCuuCgCCUCCGCGgCCUAG- -5'
9635 3' -54.5 NC_002577.1 + 13653 0.71 0.753356
Target:  5'- -aCAUGAGAgucgGGUGauGAGGCGCCguaaGGAUCa -3'
miRNA:   3'- caGUAUUCU----UCGC--CUCCGCGG----CCUAG- -5'
9635 3' -54.5 NC_002577.1 + 142485 0.72 0.703528
Target:  5'- aUCGgggggGGGggGgGGGGGgGCgCGGGUCg -3'
miRNA:   3'- cAGUa----UUCuuCgCCUCCgCG-GCCUAG- -5'
9635 3' -54.5 NC_002577.1 + 11269 1.09 0.003862
Target:  5'- gGUCAUAAGAAGCGGAGGCGCCGGAUCu -3'
miRNA:   3'- -CAGUAUUCUUCGCCUCCGCGGCCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.