miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9635 5' -63.8 NC_002577.1 + 135085 0.66 0.597267
Target:  5'- uAGCGCagaagcgCCGGCGag-CCCGCGGg -3'
miRNA:   3'- cUCGCGgcca---GGCCGCgaaGGGCGCU- -5'
9635 5' -63.8 NC_002577.1 + 162243 0.66 0.597267
Target:  5'- uAGCGCagaagcgCCGGCGag-CCCGCGGg -3'
miRNA:   3'- cUCGCGgcca---GGCCGCgaaGGGCGCU- -5'
9635 5' -63.8 NC_002577.1 + 122347 0.66 0.578102
Target:  5'- -cGUGuUCGuGUCCGGcCGCggCCCGCGc -3'
miRNA:   3'- cuCGC-GGC-CAGGCC-GCGaaGGGCGCu -5'
9635 5' -63.8 NC_002577.1 + 11267 0.66 0.578102
Target:  5'- -cGUGuUCGuGUCCGGcCGCggCCCGCGc -3'
miRNA:   3'- cuCGC-GGC-CAGGCC-GCGaaGGGCGCu -5'
9635 5' -63.8 NC_002577.1 + 11920 0.67 0.549624
Target:  5'- -cGCGCCuGcUCCGGCGCg-CCgagCGCGAa -3'
miRNA:   3'- cuCGCGGcC-AGGCCGCGaaGG---GCGCU- -5'
9635 5' -63.8 NC_002577.1 + 141337 0.67 0.540224
Target:  5'- -cGCGCCGGUCCaaccguGGCGacgCCgGCa- -3'
miRNA:   3'- cuCGCGGCCAGG------CCGCgaaGGgCGcu -5'
9635 5' -63.8 NC_002577.1 + 156001 0.67 0.540224
Target:  5'- -cGCGCCGGUCCaaccguGGCGacgCCgGCa- -3'
miRNA:   3'- cuCGCGGCCAGG------CCGCgaaGGgCGcu -5'
9635 5' -63.8 NC_002577.1 + 121671 0.67 0.53088
Target:  5'- -cGCGcCCGGUCC-GCGCccUCCgGCGu -3'
miRNA:   3'- cuCGC-GGCCAGGcCGCGa-AGGgCGCu -5'
9635 5' -63.8 NC_002577.1 + 158142 0.67 0.53088
Target:  5'- -cGCGCUcccUCCcGCGCUUUCCGCGGc -3'
miRNA:   3'- cuCGCGGcc-AGGcCGCGAAGGGCGCU- -5'
9635 5' -63.8 NC_002577.1 + 11943 0.67 0.53088
Target:  5'- -cGCGcCCGGUCC-GCGCccUCCgGCGu -3'
miRNA:   3'- cuCGC-GGCCAGGcCGCGa-AGGgCGCu -5'
9635 5' -63.8 NC_002577.1 + 139196 0.67 0.53088
Target:  5'- -cGCGCUcccUCCcGCGCUUUCCGCGGc -3'
miRNA:   3'- cuCGCGGcc-AGGcCGCGAAGGGCGCU- -5'
9635 5' -63.8 NC_002577.1 + 39645 0.67 0.53088
Target:  5'- cGAGCGCCGGUaa-GCGCaaaacggCCgGCGGa -3'
miRNA:   3'- -CUCGCGGCCAggcCGCGaa-----GGgCGCU- -5'
9635 5' -63.8 NC_002577.1 + 107583 0.67 0.528088
Target:  5'- gGAGauCCGGUCCGGCGaCUcguucuuggacgaaUCUCGuCGAg -3'
miRNA:   3'- -CUCgcGGCCAGGCCGC-GA--------------AGGGC-GCU- -5'
9635 5' -63.8 NC_002577.1 + 27744 0.67 0.516054
Target:  5'- -cGUGCUGGUCCGGC-CUgcaagacggccaaacUCCCGUc- -3'
miRNA:   3'- cuCGCGGCCAGGCCGcGA---------------AGGGCGcu -5'
9635 5' -63.8 NC_002577.1 + 122441 0.67 0.506873
Target:  5'- cGAGCGgaGGUCCGGCggggaccgucguuccGCUggccggCCCGCc- -3'
miRNA:   3'- -CUCGCggCCAGGCCG---------------CGAa-----GGGCGcu -5'
9635 5' -63.8 NC_002577.1 + 11173 0.67 0.506873
Target:  5'- cGAGCGgaGGUCCGGCggggaccgucguuccGCUggccggCCCGCc- -3'
miRNA:   3'- -CUCGCggCCAGGCCG---------------CGAa-----GGGCGcu -5'
9635 5' -63.8 NC_002577.1 + 163261 0.68 0.494138
Target:  5'- cGAGCGCCcgcgcGG-CCGGCGggcaugUCCgGCGGg -3'
miRNA:   3'- -CUCGCGG-----CCaGGCCGCga----AGGgCGCU- -5'
9635 5' -63.8 NC_002577.1 + 137140 0.68 0.494138
Target:  5'- cGAGgGCCGGUC--GCGCU--CCGCGGa -3'
miRNA:   3'- -CUCgCGGCCAGgcCGCGAagGGCGCU- -5'
9635 5' -63.8 NC_002577.1 + 134067 0.68 0.494138
Target:  5'- cGAGCGCCcgcgcGG-CCGGCGggcaugUCCgGCGGg -3'
miRNA:   3'- -CUCGCGG-----CCaGGCCGCga----AGGgCGCU- -5'
9635 5' -63.8 NC_002577.1 + 160198 0.68 0.494138
Target:  5'- cGAGgGCCGGUC--GCGCU--CCGCGGa -3'
miRNA:   3'- -CUCgCGGCCAGgcCGCGAagGGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.