miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9636 3' -45.9 NC_002577.1 + 41610 0.66 0.999921
Target:  5'- -cUUGUGCCUgucGCGCCGGUGAc---- -3'
miRNA:   3'- caAGCGUGGAa--CGCGGUUAUUauaua -5'
9636 3' -45.9 NC_002577.1 + 82344 0.66 0.999921
Target:  5'- uGUUCGCAUCauuaucUGUGCuCGAUGAUGUu- -3'
miRNA:   3'- -CAAGCGUGGa-----ACGCG-GUUAUUAUAua -5'
9636 3' -45.9 NC_002577.1 + 36240 0.67 0.999895
Target:  5'- --gCGUugCUUGCGCCGAc------- -3'
miRNA:   3'- caaGCGugGAACGCGGUUauuauaua -5'
9636 3' -45.9 NC_002577.1 + 85591 0.67 0.999701
Target:  5'- aGUUCGCAggaCUUG-GCCAGUGcUAUAg -3'
miRNA:   3'- -CAAGCGUg--GAACgCGGUUAUuAUAUa -5'
9636 3' -45.9 NC_002577.1 + 128965 0.68 0.999618
Target:  5'- -cUCGguCCUUGCGCgCAGUAc----- -3'
miRNA:   3'- caAGCguGGAACGCG-GUUAUuauaua -5'
9636 3' -45.9 NC_002577.1 + 4649 0.68 0.999618
Target:  5'- -cUCGguCCUUGCGCgCAGUAc----- -3'
miRNA:   3'- caAGCguGGAACGCG-GUUAUuauaua -5'
9636 3' -45.9 NC_002577.1 + 75373 0.68 0.999517
Target:  5'- -cUCGCGCgauguagugGCGCCGAUGAUGa-- -3'
miRNA:   3'- caAGCGUGgaa------CGCGGUUAUUAUaua -5'
9636 3' -45.9 NC_002577.1 + 153378 0.68 0.999517
Target:  5'- --gCGUACCgcGCGCCAAUuuucGUGUAg -3'
miRNA:   3'- caaGCGUGGaaCGCGGUUAu---UAUAUa -5'
9636 3' -45.9 NC_002577.1 + 35435 0.69 0.99906
Target:  5'- -cUCGCACUcUGCGuCCAAUucUAUGUc -3'
miRNA:   3'- caAGCGUGGaACGC-GGUUAuuAUAUA- -5'
9636 3' -45.9 NC_002577.1 + 118868 0.71 0.995014
Target:  5'- -cUCGUuuuuguccucaGCCUUGCGCUAGUAAgcUGUAa -3'
miRNA:   3'- caAGCG-----------UGGAACGCGGUUAUU--AUAUa -5'
9636 3' -45.9 NC_002577.1 + 44144 0.76 0.909709
Target:  5'- cGUUCGCauauGCCUUGuCGCCGAUGAcGUGc -3'
miRNA:   3'- -CAAGCG----UGGAAC-GCGGUUAUUaUAUa -5'
9636 3' -45.9 NC_002577.1 + 11141 1.06 0.03452
Target:  5'- cGUUCGCACCUUGCGCCAAUAAUAUAUu -3'
miRNA:   3'- -CAAGCGUGGAACGCGGUUAUUAUAUA- -5'
9636 3' -45.9 NC_002577.1 + 122472 1.06 0.03452
Target:  5'- cGUUCGCACCUUGCGCCAAUAAUAUAUu -3'
miRNA:   3'- -CAAGCGUGGAACGCGGUUAUUAUAUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.