miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9637 5' -58.7 NC_002577.1 + 104203 0.66 0.826049
Target:  5'- cGUCCGUuuccaGGCGAGAGCGccuuuUGGuGGCGc -3'
miRNA:   3'- -UAGGCGc----CUGCUCUUGCu----ACC-CCGCa -5'
9637 5' -58.7 NC_002577.1 + 16512 0.66 0.817695
Target:  5'- aGUUCGaaGAUGAGGGCGggGGGGUu- -3'
miRNA:   3'- -UAGGCgcCUGCUCUUGCuaCCCCGca -5'
9637 5' -58.7 NC_002577.1 + 109499 0.66 0.817695
Target:  5'- uUCCGCGGACGcugcGGGACGAc--GGCa- -3'
miRNA:   3'- uAGGCGCCUGC----UCUUGCUaccCCGca -5'
9637 5' -58.7 NC_002577.1 + 126197 0.66 0.80918
Target:  5'- -aCgGCGGAaaCGAGAaaGCGcgGGGGgGg -3'
miRNA:   3'- uaGgCGCCU--GCUCU--UGCuaCCCCgCa -5'
9637 5' -58.7 NC_002577.1 + 7417 0.66 0.80918
Target:  5'- -aCgGCGGAaaCGAGAaaGCGcgGGGGgGg -3'
miRNA:   3'- uaGgCGCCU--GCUCU--UGCuaCCCCgCa -5'
9637 5' -58.7 NC_002577.1 + 68130 0.66 0.80918
Target:  5'- -cCCGCGGACucgcuGAGCaGAUGGcGaGCGUg -3'
miRNA:   3'- uaGGCGCCUGcu---CUUG-CUACC-C-CGCA- -5'
9637 5' -58.7 NC_002577.1 + 106446 0.66 0.80832
Target:  5'- cGUCgGCGGGucaGAGAcgccccgGCGAUcuaucgccGGGGCGUa -3'
miRNA:   3'- -UAGgCGCCUg--CUCU-------UGCUA--------CCCCGCA- -5'
9637 5' -58.7 NC_002577.1 + 123093 0.66 0.807458
Target:  5'- -gCCGCGGguGCGGGGcCGGggggaaagucggGGGGCGa -3'
miRNA:   3'- uaGGCGCC--UGCUCUuGCUa-----------CCCCGCa -5'
9637 5' -58.7 NC_002577.1 + 10521 0.66 0.807458
Target:  5'- -gCCGCGGguGCGGGGcCGGggggaaagucggGGGGCGa -3'
miRNA:   3'- uaGGCGCC--UGCUCUuGCUa-----------CCCCGCa -5'
9637 5' -58.7 NC_002577.1 + 87365 0.67 0.764467
Target:  5'- uUCUGCGaauaGAuccuuuaacUGAGAAgGAUGGGGCGa -3'
miRNA:   3'- uAGGCGC----CU---------GCUCUUgCUACCCCGCa -5'
9637 5' -58.7 NC_002577.1 + 158309 0.68 0.726627
Target:  5'- --gCGCGGugGcGGGCGGggGGGGCa- -3'
miRNA:   3'- uagGCGCCugCuCUUGCUa-CCCCGca -5'
9637 5' -58.7 NC_002577.1 + 139028 0.68 0.726627
Target:  5'- --gCGCGGugGcGGGCGGggGGGGCa- -3'
miRNA:   3'- uagGCGCCugCuCUUGCUa-CCCCGca -5'
9637 5' -58.7 NC_002577.1 + 128994 0.68 0.726627
Target:  5'- -gCCGCGGGuacgcgcgcCGAGuAUGggGGGGCGc -3'
miRNA:   3'- uaGGCGCCU---------GCUCuUGCuaCCCCGCa -5'
9637 5' -58.7 NC_002577.1 + 121905 0.69 0.627756
Target:  5'- ---aGCGGAgcCGGGGACGGagGGGGCGa -3'
miRNA:   3'- uaggCGCCU--GCUCUUGCUa-CCCCGCa -5'
9637 5' -58.7 NC_002577.1 + 11709 0.69 0.627756
Target:  5'- ---aGCGGAgcCGGGGACGGagGGGGCGa -3'
miRNA:   3'- uaggCGCCU--GCUCUUGCUa-CCCCGCa -5'
9637 5' -58.7 NC_002577.1 + 138916 0.81 0.147759
Target:  5'- aAUCCGUaggcgcgugcgGGACGAGAGCcGUGGGGCGUc -3'
miRNA:   3'- -UAGGCG-----------CCUGCUCUUGcUACCCCGCA- -5'
9637 5' -58.7 NC_002577.1 + 158421 0.81 0.147759
Target:  5'- aAUCCGUaggcgcgugcgGGACGAGAGCcGUGGGGCGUc -3'
miRNA:   3'- -UAGGCG-----------CCUGCUCUUGcUACCCCGCA- -5'
9637 5' -58.7 NC_002577.1 + 122973 1.05 0.003549
Target:  5'- gAUCCGCGGACGAGAACGAUGGGGCGUc -3'
miRNA:   3'- -UAGGCGCCUGCUCUUGCUACCCCGCA- -5'
9637 5' -58.7 NC_002577.1 + 10641 1.05 0.003549
Target:  5'- gAUCCGCGGACGAGAACGAUGGGGCGUc -3'
miRNA:   3'- -UAGGCGCCUGCUCUUGCUACCCCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.