miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9638 3' -57.5 NC_002577.1 + 10296 0.66 0.870848
Target:  5'- cGGCUCGGcGcgaGCCgGC-CUCGGAgAGAACg -3'
miRNA:   3'- -UCGAGCC-C---UGG-CGaGGGCUUgUCUUG- -5'
9638 3' -57.5 NC_002577.1 + 123318 0.66 0.870848
Target:  5'- cGGCUCGGcGcgaGCCgGC-CUCGGAgAGAACg -3'
miRNA:   3'- -UCGAGCC-C---UGG-CGaGGGCUUgUCUUG- -5'
9638 3' -57.5 NC_002577.1 + 9741 0.66 0.863493
Target:  5'- cGUUUGGGuCCGggCCCGAGUAGggUu -3'
miRNA:   3'- uCGAGCCCuGGCgaGGGCUUGUCuuG- -5'
9638 3' -57.5 NC_002577.1 + 123872 0.66 0.863493
Target:  5'- cGUUUGGGuCCGggCCCGAGUAGggUu -3'
miRNA:   3'- uCGAGCCCuGGCgaGGGCUUGUCuuG- -5'
9638 3' -57.5 NC_002577.1 + 64322 0.66 0.863493
Target:  5'- gGGCUUGaaGGAaaccaCGCUCgUGGAUAGAGCc -3'
miRNA:   3'- -UCGAGC--CCUg----GCGAGgGCUUGUCUUG- -5'
9638 3' -57.5 NC_002577.1 + 75853 0.66 0.862746
Target:  5'- -aCUCGGGACgCGCUCgauucguCCGuGCuGGAGCg -3'
miRNA:   3'- ucGAGCCCUG-GCGAG-------GGCuUG-UCUUG- -5'
9638 3' -57.5 NC_002577.1 + 111345 0.66 0.855935
Target:  5'- uAGCUaCGGGACCguuggcauaauuGCUCaCGcAACAGAAa -3'
miRNA:   3'- -UCGA-GCCCUGG------------CGAGgGC-UUGUCUUg -5'
9638 3' -57.5 NC_002577.1 + 109906 0.66 0.840235
Target:  5'- cGCUCGaagcguuGGCCGCgugUCCCGaAACGGAAa -3'
miRNA:   3'- uCGAGCc------CUGGCG---AGGGC-UUGUCUUg -5'
9638 3' -57.5 NC_002577.1 + 122801 0.67 0.827142
Target:  5'- -uCUCGGGACgGCgcgcgaucgcuUCCCGGccgccugcgaucccaACGGGACg -3'
miRNA:   3'- ucGAGCCCUGgCG-----------AGGGCU---------------UGUCUUG- -5'
9638 3' -57.5 NC_002577.1 + 10813 0.67 0.827142
Target:  5'- -uCUCGGGACgGCgcgcgaucgcuUCCCGGccgccugcgaucccaACGGGACg -3'
miRNA:   3'- ucGAGCCCUGgCG-----------AGGGCU---------------UGUCUUG- -5'
9638 3' -57.5 NC_002577.1 + 48058 0.67 0.815323
Target:  5'- gAGCUCGaGACCGCggaaaauggauaUCaaauaCGAACAGAAg -3'
miRNA:   3'- -UCGAGCcCUGGCG------------AGg----GCUUGUCUUg -5'
9638 3' -57.5 NC_002577.1 + 122493 0.67 0.813608
Target:  5'- aAGCgCGGGACCGCgguaauaaagcgCCCGccgucGCGGAu- -3'
miRNA:   3'- -UCGaGCCCUGGCGa-----------GGGCu----UGUCUug -5'
9638 3' -57.5 NC_002577.1 + 11121 0.67 0.813608
Target:  5'- aAGCgCGGGACCGCgguaauaaagcgCCCGccgucGCGGAu- -3'
miRNA:   3'- -UCGaGCCCUGGCGa-----------GGGCu----UGUCUug -5'
9638 3' -57.5 NC_002577.1 + 136971 0.67 0.806685
Target:  5'- cGUUUGGGAa-GgUCCCGGACAGGc- -3'
miRNA:   3'- uCGAGCCCUggCgAGGGCUUGUCUug -5'
9638 3' -57.5 NC_002577.1 + 134865 0.67 0.806685
Target:  5'- cGgaCGGGGCCGCa-CCGGAUccggaGGAGCg -3'
miRNA:   3'- uCgaGCCCUGGCGagGGCUUG-----UCUUG- -5'
9638 3' -57.5 NC_002577.1 + 162463 0.67 0.806685
Target:  5'- cGgaCGGGGCCGCa-CCGGAUccggaGGAGCg -3'
miRNA:   3'- uCgaGCCCUGGCGagGGCUUG-----UCUUG- -5'
9638 3' -57.5 NC_002577.1 + 160367 0.67 0.806685
Target:  5'- cGUUUGGGAa-GgUCCCGGACAGGc- -3'
miRNA:   3'- uCGAGCCCUggCgAGGGCUUGUCUug -5'
9638 3' -57.5 NC_002577.1 + 100355 0.67 0.806685
Target:  5'- cAGUaCGuGGGCUGCUCCgGAugAuGGACg -3'
miRNA:   3'- -UCGaGC-CCUGGCGAGGgCUugU-CUUG- -5'
9638 3' -57.5 NC_002577.1 + 766 0.67 0.804939
Target:  5'- cGCUCGGGGCCGgguacaaguugCCCGGguccGCGGGu- -3'
miRNA:   3'- uCGAGCCCUGGCga---------GGGCU----UGUCUug -5'
9638 3' -57.5 NC_002577.1 + 132847 0.67 0.804939
Target:  5'- cGCUCGGGGCCGgguacaaguugCCCGGguccGCGGGu- -3'
miRNA:   3'- uCGAGCCCUGGCga---------GGGCU----UGUCUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.