miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9639 3' -48.4 NC_002577.1 + 135005 0.66 0.999735
Target:  5'- aGGAagaCCGcgcGGCGACAgCGC-CUAGAAGa -3'
miRNA:   3'- -CCUg--GGU---UUGCUGUaGCGaGGUUUUC- -5'
9639 3' -48.4 NC_002577.1 + 77900 0.66 0.999735
Target:  5'- gGGGCaCGGAuCGugAUCGCcgcagaaugUCCAGAAGc -3'
miRNA:   3'- -CCUGgGUUU-GCugUAGCG---------AGGUUUUC- -5'
9639 3' -48.4 NC_002577.1 + 98949 0.66 0.999735
Target:  5'- uGugCCGAugGGC-UUG-UCCAAAAGg -3'
miRNA:   3'- cCugGGUUugCUGuAGCgAGGUUUUC- -5'
9639 3' -48.4 NC_002577.1 + 162323 0.66 0.999735
Target:  5'- aGGAagaCCGcgcGGCGACAgCGC-CUAGAAGa -3'
miRNA:   3'- -CCUg--GGU---UUGCUGUaGCGaGGUUUUC- -5'
9639 3' -48.4 NC_002577.1 + 158999 0.66 0.999579
Target:  5'- cGGGCCUcucggcGGAcacCGACAggCGCUCCGGGGc -3'
miRNA:   3'- -CCUGGG------UUU---GCUGUa-GCGAGGUUUUc -5'
9639 3' -48.4 NC_002577.1 + 139304 0.66 0.999579
Target:  5'- gGGAUUCAGaggGCGGCGUucCGUUCCAGu-- -3'
miRNA:   3'- -CCUGGGUU---UGCUGUA--GCGAGGUUuuc -5'
9639 3' -48.4 NC_002577.1 + 158034 0.66 0.999579
Target:  5'- gGGAUUCAGaggGCGGCGUucCGUUCCAGu-- -3'
miRNA:   3'- -CCUGGGUU---UGCUGUA--GCGAGGUUuuc -5'
9639 3' -48.4 NC_002577.1 + 28943 0.66 0.999579
Target:  5'- cGGGCCCGAugGAgggcuggguacCGUCGCaauaacggCCGAu-- -3'
miRNA:   3'- -CCUGGGUUugCU-----------GUAGCGa-------GGUUuuc -5'
9639 3' -48.4 NC_002577.1 + 41517 0.66 0.999474
Target:  5'- -uGCCCAcgcgucggacGCGACGuUCGCUCCuauAAGAGg -3'
miRNA:   3'- ccUGGGUu---------UGCUGU-AGCGAGG---UUUUC- -5'
9639 3' -48.4 NC_002577.1 + 15899 0.66 0.999474
Target:  5'- cGACCUuGGCGACAUaucCGCUCgAGuGGu -3'
miRNA:   3'- cCUGGGuUUGCUGUA---GCGAGgUUuUC- -5'
9639 3' -48.4 NC_002577.1 + 110567 0.66 0.999348
Target:  5'- cGGACgCGAGCGAUAuUCGUgugCCGGu-- -3'
miRNA:   3'- -CCUGgGUUUGCUGU-AGCGa--GGUUuuc -5'
9639 3' -48.4 NC_002577.1 + 87718 0.67 0.999196
Target:  5'- gGGGCCaCAAA--ACAcUCGgUCCAAAAGg -3'
miRNA:   3'- -CCUGG-GUUUgcUGU-AGCgAGGUUUUC- -5'
9639 3' -48.4 NC_002577.1 + 61044 0.67 0.999196
Target:  5'- aGGGCCCAAAaCGuaACGUCGCg--GGAAGc -3'
miRNA:   3'- -CCUGGGUUU-GC--UGUAGCGaggUUUUC- -5'
9639 3' -48.4 NC_002577.1 + 59608 0.67 0.999014
Target:  5'- -aACCCGAGCGcCAUCGCgagcgcuaCCuuAGGg -3'
miRNA:   3'- ccUGGGUUUGCuGUAGCGa-------GGuuUUC- -5'
9639 3' -48.4 NC_002577.1 + 4820 0.67 0.999014
Target:  5'- aGGACCgAGGCGGC---GUUCCAAAc- -3'
miRNA:   3'- -CCUGGgUUUGCUGuagCGAGGUUUuc -5'
9639 3' -48.4 NC_002577.1 + 128793 0.67 0.999014
Target:  5'- aGGACCgAGGCGg---CGUUCCAAAc- -3'
miRNA:   3'- -CCUGGgUUUGCuguaGCGAGGUUUuc -5'
9639 3' -48.4 NC_002577.1 + 109975 0.67 0.999014
Target:  5'- aGACUgcuaUGAAUGAUAUCGCUCUAGuGGa -3'
miRNA:   3'- cCUGG----GUUUGCUGUAGCGAGGUUuUC- -5'
9639 3' -48.4 NC_002577.1 + 161206 0.67 0.998799
Target:  5'- cGGcccGCCCAGGCGGCG-CuCUCCGGuAGg -3'
miRNA:   3'- -CC---UGGGUUUGCUGUaGcGAGGUUuUC- -5'
9639 3' -48.4 NC_002577.1 + 1156 0.67 0.998799
Target:  5'- cGGACCgCAGcCuuuGCGUCGCcgCCGGGAGa -3'
miRNA:   3'- -CCUGG-GUUuGc--UGUAGCGa-GGUUUUC- -5'
9639 3' -48.4 NC_002577.1 + 136713 0.67 0.998799
Target:  5'- aGGCCCGGcgucGCG-CA-CGCUUCAGGGGg -3'
miRNA:   3'- cCUGGGUU----UGCuGUaGCGAGGUUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.