miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9639 5' -61.8 NC_002577.1 + 162212 0.66 0.69894
Target:  5'- cGCUCGCGGaugauaUGuCGUACC--CGCGGGGc -3'
miRNA:   3'- uCGGGCGCC------AC-GCAUGGacGUGCCCU- -5'
9639 5' -61.8 NC_002577.1 + 135116 0.66 0.69894
Target:  5'- cGCUCGCGGaugauaUGuCGUACC--CGCGGGGc -3'
miRNA:   3'- uCGGGCGCC------AC-GCAUGGacGUGCCCU- -5'
9639 5' -61.8 NC_002577.1 + 130963 0.66 0.689278
Target:  5'- cAGCCCaucgcagaGCGG-GCG-ACCgcuaCACGGGAc -3'
miRNA:   3'- -UCGGG--------CGCCaCGCaUGGac--GUGCCCU- -5'
9639 5' -61.8 NC_002577.1 + 2651 0.66 0.689278
Target:  5'- cAGCCCaucgcagaGCGG-GCG-ACCgcuaCACGGGAc -3'
miRNA:   3'- -UCGGG--------CGCCaCGCaUGGac--GUGCCCU- -5'
9639 5' -61.8 NC_002577.1 + 139565 0.66 0.644393
Target:  5'- cGGCUCGUGGUcugccgugcuuuccgGCGUgcgcgccgccGCCggGCGCGGGu -3'
miRNA:   3'- -UCGGGCGCCA---------------CGCA----------UGGa-CGUGCCCu -5'
9639 5' -61.8 NC_002577.1 + 157772 0.66 0.644393
Target:  5'- cGGCUCGUGGUcugccgugcuuuccgGCGUgcgcgccgccGCCggGCGCGGGu -3'
miRNA:   3'- -UCGGGCGCCA---------------CGCA----------UGGa-CGUGCCCu -5'
9639 5' -61.8 NC_002577.1 + 119197 0.67 0.630661
Target:  5'- uGCCCGCGuuaUGCGUGCCgaaauGCGGuGAu -3'
miRNA:   3'- uCGGGCGCc--ACGCAUGGacg--UGCC-CU- -5'
9639 5' -61.8 NC_002577.1 + 137680 0.67 0.581766
Target:  5'- cGCCCGCGcGUcCGgacaucCCUGC-CGGGGa -3'
miRNA:   3'- uCGGGCGC-CAcGCau----GGACGuGCCCU- -5'
9639 5' -61.8 NC_002577.1 + 153912 0.69 0.505522
Target:  5'- cAGgCCGCGuaguUGCGUGuCCUGaACGGGAa -3'
miRNA:   3'- -UCgGGCGCc---ACGCAU-GGACgUGCCCU- -5'
9639 5' -61.8 NC_002577.1 + 48494 0.7 0.433887
Target:  5'- gAGUcgCCGCGGgacUGCGUgauccACCUGCcCGGGGc -3'
miRNA:   3'- -UCG--GGCGCC---ACGCA-----UGGACGuGCCCU- -5'
9639 5' -61.8 NC_002577.1 + 93553 0.71 0.368502
Target:  5'- gAGUCgCGUGGUGCGg--CUGCGCGGaGAa -3'
miRNA:   3'- -UCGG-GCGCCACGCaugGACGUGCC-CU- -5'
9639 5' -61.8 NC_002577.1 + 1065 0.72 0.353245
Target:  5'- cGCguaCGCGGaa-GUGCUUGCACGGGAa -3'
miRNA:   3'- uCGg--GCGCCacgCAUGGACGUGCCCU- -5'
9639 5' -61.8 NC_002577.1 + 132549 0.72 0.353245
Target:  5'- cGCguaCGCGGaa-GUGCUUGCACGGGAa -3'
miRNA:   3'- uCGg--GCGCCacgCAUGGACGUGCCCU- -5'
9639 5' -61.8 NC_002577.1 + 81265 0.72 0.324092
Target:  5'- uGgCCGCGG-GCGUGgCgcaGCACGGGGa -3'
miRNA:   3'- uCgGGCGCCaCGCAUgGa--CGUGCCCU- -5'
9639 5' -61.8 NC_002577.1 + 124588 0.74 0.259194
Target:  5'- aGGCCCGCGGUGCGcGCgaaggguuaGUugGGGGa -3'
miRNA:   3'- -UCGGGCGCCACGCaUGga-------CGugCCCU- -5'
9639 5' -61.8 NC_002577.1 + 9026 0.74 0.259194
Target:  5'- aGGCCCGCGGUGCGcGCgaaggguuaGUugGGGGa -3'
miRNA:   3'- -UCGGGCGCCACGCaUGga-------CGugCCCU- -5'
9639 5' -61.8 NC_002577.1 + 217 0.77 0.165368
Target:  5'- cAGCCCGCGGgcugaGUGcACCUGUggcgGCGGGAg -3'
miRNA:   3'- -UCGGGCGCCa----CGCaUGGACG----UGCCCU- -5'
9639 5' -61.8 NC_002577.1 + 133397 0.77 0.165368
Target:  5'- cAGCCCGCGGgcugaGUGcACCUGUggcgGCGGGAg -3'
miRNA:   3'- -UCGGGCGCCa----CGCaUGGACG----UGCCCU- -5'
9639 5' -61.8 NC_002577.1 + 9612 1.08 0.001109
Target:  5'- gAGCCCGCGGUGCGUACCUGCACGGGAu -3'
miRNA:   3'- -UCGGGCGCCACGCAUGGACGUGCCCU- -5'
9639 5' -61.8 NC_002577.1 + 124002 1.08 0.001109
Target:  5'- gAGCCCGCGGUGCGUACCUGCACGGGAu -3'
miRNA:   3'- -UCGGGCGCCACGCAUGGACGUGCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.