miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9640 3' -51.4 NC_002577.1 + 125666 0.66 0.989676
Target:  5'- gGGGAGCGcggagCGCGGGcgcGGgcaggGAGUUa -3'
miRNA:   3'- gCCCUCGCa----GCGUCCuu-UCa----UUCAAg -5'
9640 3' -51.4 NC_002577.1 + 7948 0.66 0.989676
Target:  5'- gGGGAGCGcggagCGCGGGcgcGGgcaggGAGUUa -3'
miRNA:   3'- gCCCUCGCa----GCGUCCuu-UCa----UUCAAg -5'
9640 3' -51.4 NC_002577.1 + 2552 0.67 0.986687
Target:  5'- gGGGAgGCGUUuaGGGGucGGGUcGGGUUCg -3'
miRNA:   3'- gCCCU-CGCAGcgUCCU--UUCA-UUCAAG- -5'
9640 3' -51.4 NC_002577.1 + 131062 0.67 0.986687
Target:  5'- gGGGAgGCGUUuaGGGGucGGGUcGGGUUCg -3'
miRNA:   3'- gCCCU-CGCAGcgUCCU--UUCA-UUCAAG- -5'
9640 3' -51.4 NC_002577.1 + 156709 0.67 0.984963
Target:  5'- gGGGAG-GUgGUguaGGGGGAGUGGGUg- -3'
miRNA:   3'- gCCCUCgCAgCG---UCCUUUCAUUCAag -5'
9640 3' -51.4 NC_002577.1 + 117877 0.67 0.984963
Target:  5'- aCGGGAGUagugauuUUGUAGGAAuGUAAGUg- -3'
miRNA:   3'- -GCCCUCGc------AGCGUCCUUuCAUUCAag -5'
9640 3' -51.4 NC_002577.1 + 133483 0.67 0.981011
Target:  5'- gGGGGGUGaaaUGCAGGggGGgauauUAAGUUg -3'
miRNA:   3'- gCCCUCGCa--GCGUCCuuUC-----AUUCAAg -5'
9640 3' -51.4 NC_002577.1 + 164237 0.67 0.981011
Target:  5'- gGGGGGUGaaaUGCAGGggGGgauauUAAGUUg -3'
miRNA:   3'- gCCCUCGCa--GCGUCCuuUC-----AUUCAAg -5'
9640 3' -51.4 NC_002577.1 + 91016 0.67 0.978766
Target:  5'- gGGGAGCGUCGaccCAcGggGGUAugcGUUUa -3'
miRNA:   3'- gCCCUCGCAGC---GUcCuuUCAUu--CAAG- -5'
9640 3' -51.4 NC_002577.1 + 49764 0.68 0.973695
Target:  5'- ---cAGCGU-GCGGGAAGGgcGGUUCg -3'
miRNA:   3'- gcccUCGCAgCGUCCUUUCauUCAAG- -5'
9640 3' -51.4 NC_002577.1 + 112613 0.68 0.967799
Target:  5'- gCGGGAcCGUCGCAGucGAGAGcgAAGUc- -3'
miRNA:   3'- -GCCCUcGCAGCGUC--CUUUCa-UUCAag -5'
9640 3' -51.4 NC_002577.1 + 2692 0.69 0.961021
Target:  5'- gGGGGGUGUgGaAGGAGGGUAcuaGGUUa -3'
miRNA:   3'- gCCCUCGCAgCgUCCUUUCAU---UCAAg -5'
9640 3' -51.4 NC_002577.1 + 130921 0.69 0.961021
Target:  5'- gGGGGGUGUgGaAGGAGGGUAcuaGGUUa -3'
miRNA:   3'- gCCCUCGCAgCgUCCUUUCAU---UCAAg -5'
9640 3' -51.4 NC_002577.1 + 61594 0.7 0.933447
Target:  5'- gGGGAGCaUCGCGGGAucuauucugugcuuAAGUAAugacGUUUg -3'
miRNA:   3'- gCCCUCGcAGCGUCCU--------------UUCAUU----CAAG- -5'
9640 3' -51.4 NC_002577.1 + 160632 0.7 0.924314
Target:  5'- gCGGGAaaggcccgGCGUCGCggcacgcuucaGGGggGGUGGGg-- -3'
miRNA:   3'- -GCCCU--------CGCAGCG-----------UCCuuUCAUUCaag -5'
9640 3' -51.4 NC_002577.1 + 136706 0.7 0.9186
Target:  5'- gCGGGAaaggcccgGCGUCGCgcacgcuucaGGGggGGUGGGg-- -3'
miRNA:   3'- -GCCCU--------CGCAGCG----------UCCuuUCAUUCaag -5'
9640 3' -51.4 NC_002577.1 + 8272 1.11 0.00634
Target:  5'- uCGGGAGCGUCGCAGGAAAGUAAGUUCg -3'
miRNA:   3'- -GCCCUCGCAGCGUCCUUUCAUUCAAG- -5'
9640 3' -51.4 NC_002577.1 + 125342 1.11 0.00634
Target:  5'- uCGGGAGCGUCGCAGGAAAGUAAGUUCg -3'
miRNA:   3'- -GCCCUCGCAGCGUCCUUUCAUUCAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.