miRNA display CGI


Results 41 - 60 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9640 5' -70.1 NC_002577.1 + 6122 0.68 0.237017
Target:  5'- ---aGCCUUCCCCCUCCCCCCuCCc- -3'
miRNA:   3'- ugugUGGGGGGGGGGGGGGGGcGGua -5'
9640 5' -70.1 NC_002577.1 + 10724 0.68 0.226692
Target:  5'- gGguCGCCCCCCgacuuuCCCCCCggCCCCGCa-- -3'
miRNA:   3'- -UguGUGGGGGG------GGGGGG--GGGGCGgua -5'
9640 5' -70.1 NC_002577.1 + 130023 0.68 0.231806
Target:  5'- cACGgGCCCUCUCUCgCCCCUCCGCg-- -3'
miRNA:   3'- -UGUgUGGGGGGGGG-GGGGGGGCGgua -5'
9640 5' -70.1 NC_002577.1 + 9438 0.68 0.242326
Target:  5'- aACGCAaacgucuuuUCCCCUCCCCCCCgaUCCGgCAg -3'
miRNA:   3'- -UGUGU---------GGGGGGGGGGGGG--GGGCgGUa -5'
9640 5' -70.1 NC_002577.1 + 122080 0.69 0.184858
Target:  5'- gGC-UACCCUCCCUCCCCCCUCuCCu- -3'
miRNA:   3'- -UGuGUGGGGGGGGGGGGGGGGcGGua -5'
9640 5' -70.1 NC_002577.1 + 158121 0.69 0.193523
Target:  5'- -aAUGCCCCCCCCgCCCgCCaCCGCg-- -3'
miRNA:   3'- ugUGUGGGGGGGGgGGG-GG-GGCGgua -5'
9640 5' -70.1 NC_002577.1 + 139217 0.69 0.193522
Target:  5'- -aAUGCCCCCCCCgCCCgCCaCCGCg-- -3'
miRNA:   3'- ugUGUGGGGGGGGgGGG-GG-GGCGgua -5'
9640 5' -70.1 NC_002577.1 + 75222 0.69 0.193523
Target:  5'- cGCACGCCCUCUCCCCagCUUUCGCCu- -3'
miRNA:   3'- -UGUGUGGGGGGGGGGg-GGGGGCGGua -5'
9640 5' -70.1 NC_002577.1 + 11534 0.69 0.184858
Target:  5'- gGC-UACCCUCCCUCCCCCCUCuCCu- -3'
miRNA:   3'- -UGuGUGGGGGGGGGGGGGGGGcGGua -5'
9640 5' -70.1 NC_002577.1 + 11451 0.7 0.160891
Target:  5'- cACACAUCCUCCCgCCCCCacaaccuccuCCCCGgCGg -3'
miRNA:   3'- -UGUGUGGGGGGG-GGGGG----------GGGGCgGUa -5'
9640 5' -70.1 NC_002577.1 + 142554 0.7 0.162397
Target:  5'- -gGC-CCCCCCUCCCCCacgcagcgccuauugCCCCGUCGc -3'
miRNA:   3'- ugUGuGGGGGGGGGGGG---------------GGGGCGGUa -5'
9640 5' -70.1 NC_002577.1 + 154782 0.7 0.162397
Target:  5'- -gGC-CCCCCCUCCCCCacgcagcgccuauugCCCCGUCGc -3'
miRNA:   3'- ugUGuGGGGGGGGGGGG---------------GGGGCGGUa -5'
9640 5' -70.1 NC_002577.1 + 122163 0.7 0.160891
Target:  5'- cACACAUCCUCCCgCCCCCacaaccuccuCCCCGgCGg -3'
miRNA:   3'- -UGUGUGGGGGGG-GGGGG----------GGGGCgGUa -5'
9640 5' -70.1 NC_002577.1 + 129545 0.71 0.146505
Target:  5'- cGCAUAUCCCCCCCaCCCCCCUuCGaugguCCGg -3'
miRNA:   3'- -UGUGUGGGGGGGG-GGGGGGG-GC-----GGUa -5'
9640 5' -70.1 NC_002577.1 + 126616 0.71 0.139761
Target:  5'- aACuCAgCCCCCCCUCCCCUCaCGaCCAUu -3'
miRNA:   3'- -UGuGUgGGGGGGGGGGGGGG-GC-GGUA- -5'
9640 5' -70.1 NC_002577.1 + 125968 0.71 0.133302
Target:  5'- uGCGCGaaugcgucuuuCCCCCUuccaaggccuaaCCCCCCCCCCGCg-- -3'
miRNA:   3'- -UGUGU-----------GGGGGG------------GGGGGGGGGGCGgua -5'
9640 5' -70.1 NC_002577.1 + 7645 0.71 0.133302
Target:  5'- uGCGCGaaugcgucuuuCCCCCUuccaaggccuaaCCCCCCCCCCGCg-- -3'
miRNA:   3'- -UGUGU-----------GGGGGG------------GGGGGGGGGGCGgua -5'
9640 5' -70.1 NC_002577.1 + 129918 0.71 0.133302
Target:  5'- --cCGCCCCCCCCCCCCCacauaggaaCCucuguuccauCGCCAUc -3'
miRNA:   3'- uguGUGGGGGGGGGGGGG---------GG----------GCGGUA- -5'
9640 5' -70.1 NC_002577.1 + 4068 0.71 0.146505
Target:  5'- cGCAUAUCCCCCCCaCCCCCCUuCGaugguCCGg -3'
miRNA:   3'- -UGUGUGGGGGGGG-GGGGGGG-GC-----GGUa -5'
9640 5' -70.1 NC_002577.1 + 6997 0.71 0.139761
Target:  5'- aACuCAgCCCCCCCUCCCCUCaCGaCCAUu -3'
miRNA:   3'- -UGuGUgGGGGGGGGGGGGGG-GC-GGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.