Results 61 - 80 of 106 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
9640 | 5' | -70.1 | NC_002577.1 | + | 4068 | 0.71 | 0.146505 |
Target: 5'- cGCAUAUCCCCCCCaCCCCCCUuCGaugguCCGg -3' miRNA: 3'- -UGUGUGGGGGGGG-GGGGGGG-GC-----GGUa -5' |
|||||||
9640 | 5' | -70.1 | NC_002577.1 | + | 133672 | 0.72 | 0.130176 |
Target: 5'- -aAUAUCCCCCCCugcauuucaCCCCCCCCcCCAa -3' miRNA: 3'- ugUGUGGGGGGGG---------GGGGGGGGcGGUa -5' |
|||||||
9640 | 5' | -70.1 | NC_002577.1 | + | 164047 | 0.72 | 0.130177 |
Target: 5'- -aAUAUCCCCCCCugcauuucaCCCCCCCCcCCAa -3' miRNA: 3'- ugUGUGGGGGGGG---------GGGGGGGGcGGUa -5' |
|||||||
9640 | 5' | -70.1 | NC_002577.1 | + | 160415 | 0.73 | 0.1042 |
Target: 5'- uGCACAaggCCCCCCaCCCCCCCUgaagcgugccgcgaCGCCGg -3' miRNA: 3'- -UGUGUg--GGGGGG-GGGGGGGG--------------GCGGUa -5' |
|||||||
9640 | 5' | -70.1 | NC_002577.1 | + | 140775 | 0.73 | 0.100012 |
Target: 5'- uACGcCACCCCCCCuuagCCCCCCUCCuccuacGCCAc -3' miRNA: 3'- -UGU-GUGGGGGGG----GGGGGGGGG------CGGUa -5' |
|||||||
9640 | 5' | -70.1 | NC_002577.1 | + | 156563 | 0.73 | 0.100012 |
Target: 5'- uACGcCACCCCCCCuuagCCCCCCUCCuccuacGCCAc -3' miRNA: 3'- -UGU-GUGGGGGGG----GGGGGGGGG------CGGUa -5' |
|||||||
9640 | 5' | -70.1 | NC_002577.1 | + | 136923 | 0.73 | 0.1042 |
Target: 5'- uGCACAaggCCCCCCaCCCCCCCUgaagcgugccgcgaCGCCGg -3' miRNA: 3'- -UGUGUg--GGGGGG-GGGGGGGG--------------GCGGUa -5' |
|||||||
9640 | 5' | -70.1 | NC_002577.1 | + | 8895 | 0.74 | 0.090775 |
Target: 5'- cACGCAUUCCCggucgcccgucgCCCCCCCCCUCGCaCAUc -3' miRNA: 3'- -UGUGUGGGGG------------GGGGGGGGGGGCG-GUA- -5' |
|||||||
9640 | 5' | -70.1 | NC_002577.1 | + | 157502 | 0.74 | 0.090775 |
Target: 5'- aACGaguGCCCgCUCCCCCUCCCCGCCc- -3' miRNA: 3'- -UGUg--UGGGgGGGGGGGGGGGGCGGua -5' |
|||||||
9640 | 5' | -70.1 | NC_002577.1 | + | 9944 | 0.74 | 0.086465 |
Target: 5'- cCACACCCCUCCaccgaccaugCCCCaCCCCCGCUc- -3' miRNA: 3'- uGUGUGGGGGGG----------GGGG-GGGGGCGGua -5' |
|||||||
9640 | 5' | -70.1 | NC_002577.1 | + | 124719 | 0.74 | 0.090775 |
Target: 5'- cACGCAUUCCCggucgcccgucgCCCCCCCCCUCGCaCAUc -3' miRNA: 3'- -UGUGUGGGGG------------GGGGGGGGGGGCG-GUA- -5' |
|||||||
9640 | 5' | -70.1 | NC_002577.1 | + | 123670 | 0.74 | 0.086465 |
Target: 5'- cCACACCCCUCCaccgaccaugCCCCaCCCCCGCUc- -3' miRNA: 3'- uGUGUGGGGGGG----------GGGG-GGGGGCGGua -5' |
|||||||
9640 | 5' | -70.1 | NC_002577.1 | + | 139836 | 0.74 | 0.090775 |
Target: 5'- aACGaguGCCCgCUCCCCCUCCCCGCCc- -3' miRNA: 3'- -UGUg--UGGGgGGGGGGGGGGGGCGGua -5' |
|||||||
9640 | 5' | -70.1 | NC_002577.1 | + | 140909 | 0.75 | 0.071102 |
Target: 5'- gGCGUGCCCCCCCCaCCCCCCC-CCGa -3' miRNA: 3'- -UGUGUGGGGGGGGgGGGGGGGcGGUa -5' |
|||||||
9640 | 5' | -70.1 | NC_002577.1 | + | 131882 | 0.75 | 0.069377 |
Target: 5'- -aGCgACCCucuCCCCCCCCCCCCC-CCAUu -3' miRNA: 3'- ugUG-UGGG---GGGGGGGGGGGGGcGGUA- -5' |
|||||||
9640 | 5' | -70.1 | NC_002577.1 | + | 156429 | 0.75 | 0.071102 |
Target: 5'- gGCGUGCCCCCCCCaCCCCCCC-CCGa -3' miRNA: 3'- -UGUGUGGGGGGGGgGGGGGGGcGGUa -5' |
|||||||
9640 | 5' | -70.1 | NC_002577.1 | + | 1731 | 0.75 | 0.069376 |
Target: 5'- -aGCgACCCucuCCCCCCCCCCCCC-CCAUu -3' miRNA: 3'- ugUG-UGGG---GGGGGGGGGGGGGcGGUA- -5' |
|||||||
9640 | 5' | -70.1 | NC_002577.1 | + | 156634 | 0.76 | 0.056533 |
Target: 5'- cGCAUACCCCCCCuccgcacgguucccCUCCCCCCaCGCCu- -3' miRNA: 3'- -UGUGUGGGGGGG--------------GGGGGGGG-GCGGua -5' |
|||||||
9640 | 5' | -70.1 | NC_002577.1 | + | 140704 | 0.76 | 0.056533 |
Target: 5'- cGCAUACCCCCCCuccgcacgguucccCUCCCCCCaCGCCu- -3' miRNA: 3'- -UGUGUGGGGGGG--------------GGGGGGGG-GCGGua -5' |
|||||||
9640 | 5' | -70.1 | NC_002577.1 | + | 135183 | 0.77 | 0.052876 |
Target: 5'- -gACucCCCCCgCCCCCCCCCCCGaCCu- -3' miRNA: 3'- ugUGu-GGGGG-GGGGGGGGGGGC-GGua -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home