Results 101 - 106 of 106 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 9640 | 5' | -70.1 | NC_002577.1 | + | 163157 | 0.9 | 0.005331 |
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Target: 5'- uCGCGCCCCCCCCCCCCCCCC-CCGa -3' miRNA: 3'- uGUGUGGGGGGGGGGGGGGGGcGGUa -5' |
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| 9640 | 5' | -70.1 | NC_002577.1 | + | 131095 | 0.9 | 0.004939 |
|
Target: 5'- cCACACCCCCCCCCCCCCCCCGaaaaCCGa -3' miRNA: 3'- uGUGUGGGGGGGGGGGGGGGGC----GGUa -5' |
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| 9640 | 5' | -70.1 | NC_002577.1 | + | 134171 | 0.9 | 0.005331 |
|
Target: 5'- uCGCGCCCCCCCCCCCCCCCC-CCGa -3' miRNA: 3'- uGUGUGGGGGGGGGGGGGGGGcGGUa -5' |
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| 9640 | 5' | -70.1 | NC_002577.1 | + | 2519 | 0.9 | 0.004939 |
|
Target: 5'- cCACACCCCCCCCCCCCCCCCGaaaaCCGa -3' miRNA: 3'- uGUGUGGGGGGGGGGGGGGGGC----GGUa -5' |
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| 9640 | 5' | -70.1 | NC_002577.1 | + | 125307 | 1.04 | 0.000451 |
|
Target: 5'- cACACACCCCCCCCCCCCCCCCGCCAUc -3' miRNA: 3'- -UGUGUGGGGGGGGGGGGGGGGCGGUA- -5' |
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| 9640 | 5' | -70.1 | NC_002577.1 | + | 8307 | 1.04 | 0.000451 |
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Target: 5'- cACACACCCCCCCCCCCCCCCCGCCAUc -3' miRNA: 3'- -UGUGUGGGGGGGGGGGGGGGGCGGUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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